cyanobase » Anabaena variabilis ATCC 29413 » genes » Ava_3905

GeneView: Ava_3905

GFF3

GeneAnnotation

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ID Ava_3905
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

ribulose 1,5-bisphosphate carboxylase small subunit

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977 External)
  • Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984 External)

Genomic context

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Location Chr:4856590..4856919 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length330 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length109 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ava:ava_3905
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG Ava_3905 External -- Phylogenetic classification of ortholog.
  • MBGD ava:Ava_3905 External -- The automated construction of orthologous groups.
  • Gclust *Ava_3905* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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