cyanobase » Acaryochloris marina MBIC11017

Acaryochloris marina MBIC11017

Summary

? | +/- | Top
Data source name AM1
Full name Acaryochloris marina MBIC11017 External
Taxonomy Lineage Bacteria; Cyanobacteria; Acaryochloris

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
Am1-chr-chr Chromosome 6,503,724 6,333
Am1-preb1-preb1 pREB1 374,161 382
Am1-preb2-preb2 pREB2 356,087 408
Am1-preb3-preb3 pREB3 273,121 362
Am1-preb4-preb4 pREB4 226,680 273
Am1-preb5-preb5 pREB5 177,162 222
Am1-preb6-preb6 pREB6 172,728 188
Am1-preb7-preb7 pREB7 155,110 173
Am1-preb8-preb8 pREB8 120,693 117
Am1-preb9-preb9 pREB9 2,133 4
Total 8,361,599 8,462
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-am1

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset AM1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 329726 External
KEGG GENOME amr External
UniProt taxonomy:329726 in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/AM1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/AM1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/AM1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/AM1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/AM1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/AM1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/AM1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/AM1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer