RhizoBase Similarity Search (Genes)

Enter Query Sequence

Select Program
  • BLASTP - search gene protein sequence(s) using protein query.
  • BLASTN - search gene DNA sequence(s) using a nucleotide query.


Expectation value (E)
The statistical significance threshold for reporting matches against database sequences. Lower EXPECT thresholds are more stringent. (Example for higher stringency: 1E-5 or 1E-100, lower stringency: 100 or 1000) (-e)
Filter query sequence (DUST with blastn, SEG with others)
Number of database sequences to show one-line descriptions for (V)
Number of database sequence to show alignments for (B)
Show input data if checked
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(*) Sequences collected from Genbank

This database is compiled from sequences of bacteria to be of 3 Family (Bradyrhizobiaceae, Phyllobacteriaceae, Rhizobiaceae) and of 5 Genus (Methylobacterium, Azorhizobium, Devosia, Burkholderia, Ralstonia), containing the leguminous bacteria.

Select library

rhizobase sequences in Genbank
rhizobase peptides in Swissprot (only BLASTP)
A Kazusa API service by Kazusa DNA Research Institute