CyanoBase Similarity Search (Genomes)

Enter Query Sequence

Select Program
  • BLASTN - search genome DNA sequence(s) using nucleotide query.
  • TBLASTN - search translated genome DNA sequence(s) using a protein query.


Expectation value (E)
The statistical significance threshold for reporting matches against database sequences. Lower EXPECT thresholds are more stringent. (Example for higher stringency: 1E-5 or 1E-100, lower stringency: 100 or 1000) (-e)
Filter query sequence (DUST with blastn, SEG with others)
Number of database sequences to show one-line descriptions for (V)
Number of database sequence to show alignments for (B)
Show input data if checked
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(*) Sequences collected from Genbank

This database is compiled from sequences of bacteria to be of 3 Family (Bradyrhizobiaceae, Phyllobacteriaceae, Rhizobiaceae) and of 5 Genus (Methylobacterium, Azorhizobium, Devosia, Burkholderia, Ralstonia), containing the leguminous bacteria.

Select library

Acaryochloris marina MBIC11017
Anabaena sp. PCC 7120
Anabaena variabilis ATCC 29413
Arthrospira platensis NIES-39
Chlorobium tepidum TLS
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8801
Gloeobacter violaceus PCC 7421
Leptolyngbya boryana dg5
Microcystis aeruginosa NIES-843
Nostoc punctiforme ATCC 29133
Prochlorococcus marinus SS120
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT9313
Prochlorococcus marinus str. NATL2A
Prochlorococcus marinus str. MIT 9312
Prochlorococcus marinus str. AS9601
Prochlorococcus marinus str. MIT 9515
Prochlorococcus marinus str. MIT 9303
Prochlorococcus marinus str. NATL1A
Prochlorococcus marinus str. MIT 9301
Prochlorococcus marinus str. MIT 9215
Prochlorococcus marinus str. MIT 9211
Rhodopseudomonas palustris CGA009
Synechococcus sp. RCC307
Synechococcus sp. WH 7803
Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942
Synechococcus sp. WH8102
Synechococcus sp. CC9311
Synechococcus sp. PCC 7002
Synechococcus sp. CC9902
Synechococcus sp. CC9605
Synechococcus sp. JA-2-3B'a(2-13)
Synechococcus sp. JA-3-3Ab
Synechocystis sp. PCC 6803
Thermosynechococcus elongatus BP-1
Trichodesmium erythraeum IMS101
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