BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= AA650_17280 cysteine desulfurase
(382 letters)
Database: GCA_001039265.1P
1780 sequences; 437,307 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SYNGFB01_08730 cysteine desulfurase 96 3e-23
SYNGFB01_02225 alanine--glyoxylate aminotransferase 40 6e-05
SYNGFB01_10750 hypothetical protein 27 0.74
>SYNGFB01_08730 cysteine desulfurase
Length = 436
Score = 95.9 bits (237), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 168/389 (43%), Gaps = 42/389 (10%)
Query: 3 VYLDYSATTPTRPEAIAIIQTILTQQWGN-PSSLHEWGNRAALILETARMQVAGLINAV- 60
+YLD++AT+ + + +++ N H+ RA E AR++ A + A
Sbjct: 48 IYLDHAATSQKPRQVLEVMRHYYEHDNANVHRGAHQLSARATDAFEGARVKAAAFVGAAS 107
Query: 61 PESIIFTSGGTEADNLAIMGVARCYTTPQ-----HMIISSVEHSAISEPAKMLE-NWGWE 114
P I+FT +EA NL VAR + +++S +EH + P ++L G
Sbjct: 108 PREIVFTRNASEAINL----VARSWGEANLRAGDEVLLSVMEHHSNLVPWQLLAARTGCV 163
Query: 115 ITRLGVNHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTD 174
+ +G+ G ++ +DL+ L T LVS++ + +G + PIA + + GAL D
Sbjct: 164 LRHVGLTETGELDLDDLRRQLSERTRLVSLVQVSNTLGCLNPIARIAPLAHAAGALLLVD 223
Query: 175 AVQVAGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPG-VELMPLLGGGGQ------ 227
A Q LP++V L D L SSHKL G G G L+ R +E MP GGG+
Sbjct: 224 ACQSLPHLPVNVAALGADFLVGSSHKLCGPTGMGFLWAREALLEAMPPFLGGGEMIQDVY 283
Query: 228 ---------ENGLRSGTQATPAIAGFGVAAE-LAAQELETETGRLILLRDRLFAILADVP 277
+ +GT A G G A + L+A L+ +L +LF L +
Sbjct: 284 LDHSSWAELPHKFEAGTPAIGEAIGMGAALDYLSALGLDRIHAWEQMLTRQLFDRLQAIE 343
Query: 278 GLIPTGDKIHRLPHHLSFYLEAADGEKISGKTLVRQLNLAGIGISAGAACNSGKLSPSPI 337
G+ G + P + DG + + L+ AGI I +G C P+
Sbjct: 344 GVRILGPTPEQQPDRGALASFTVDG--LHANDIAALLDSAGICIRSGHHCT------QPL 395
Query: 338 LLAMGYSQKAALGGIRLTLGKQTTAADID 366
G S G R +LG TT +ID
Sbjct: 396 HRLYGIS-----GSARASLGFTTTPEEID 419
>SYNGFB01_02225 alanine--glyoxylate aminotransferase
Length = 402
Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 128 PEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGRLPLDVQ 187
PE +A RH ++++++ ++ G +QP+ +G + + + L D V G +PL +
Sbjct: 143 PELEEALARHRPAILALVHAETSTGILQPMEGIGDLCRRYDCLLLLDTVTSLGGVPLFLD 202
Query: 188 TLPVDL-LSLSSHKLYGGLGAGALYLRPGVE 217
VDL S S L G G + P E
Sbjct: 203 EWKVDLAYSCSQKGLSCPPGLGPFSMGPRAE 233
>SYNGFB01_10750 hypothetical protein
Length = 394
Score = 26.9 bits (58), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 29/106 (27%)
Query: 200 KLYGGLGAGALYLRPGVELMPLLGGGGQENGLRS------GTQATPAI--------AGFG 245
+ G+GA A G+E+M +L GGG+ RS +Q+ P++ AG G
Sbjct: 45 RTSSGMGAAAS----GMEMMRMLMGGGKPTATRSLDLTLRSSQSAPSVSQAEHLIPAGLG 100
Query: 246 VAAEL---------AAQELETE--TGRLILLRDRLFAILADVPGLI 280
+ L A++++ ++ GRL++ R AD P +I
Sbjct: 101 LGNSLPLLSPAPAEASRDITSDIPKGRLVIFRGCAGTAAADRPEVI 146
Database: GCA_001039265.1P
Posted date: Aug 27, 2016 10:55 PM
Number of letters in database: 437,307
Number of sequences in database: 1780
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1780
Number of Hits to DB: 371,381
Number of extensions: 17376
Number of successful extensions: 54
Number of sequences better than 1.0: 5
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 5
Length of query: 382
Length of database: 437,307
Length adjustment: 77
Effective length of query: 305
Effective length of database: 300,247
Effective search space: 91575335
Effective search space used: 91575335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)