BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= AA650_17280 cysteine desulfurase
(382 letters)
Database: GCA_001007635.1P
1878 sequences; 530,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TQ37_08655 hypothetical protein 259 4e-83
TQ37_06065 cysteine desulfurase 90 4e-21
TQ37_05320 alanine--glyoxylate aminotransferase 39 2e-04
TQ37_09935 cysteine lyase 37 5e-04
TQ37_05310 pyridoxal-dependent decarboxylase 29 0.25
TQ37_03265 DNA-directed RNA polymerase subunit alpha 28 0.43
>TQ37_08655 hypothetical protein
Length = 404
Score = 259 bits (661), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 223/396 (56%), Gaps = 25/396 (6%)
Query: 2 QVYLDYSATTPTRPEAIAIIQTILTQQWGNPSSLHEWGNRAALILETARMQVAGLINAVP 61
++YLD ATTP P A + WGNPSS H+ G +A L LE +R VA L++ P
Sbjct: 6 RLYLDGCATTPPGPGVRAAVAAAQEHVWGNPSSRHQEGRQACLALERSREHVARLLDVPP 65
Query: 62 ESIIFTSGGTEADNLAIMGVARCYTTPQHMIISSVEHSAISEPAKMLENWGWEITRLGV- 120
+ ++FTSGGTEA+ LAI GV I S+VEH A+ +L N TRL +
Sbjct: 66 DWVVFTSGGTEANQLAIHGVL--GAAGGAAICSAVEHPAV---GNLLRNRQQMATRLDLL 120
Query: 121 --NHQGRVNPEDLKAALRHNTV-LVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQ 177
+ GR+ L L + V LVSVI QSEIG++QP+A +G + ++ G H+D VQ
Sbjct: 121 RPDGHGRLTSRSLPEHLHNGPVDLVSVIAAQSEIGSLQPLATMGAVCRSRGIPLHSDGVQ 180
Query: 178 VAGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGVELMPLLGGGGQENGLRSGTQA 237
+ G+ PL + L VDLL++S+HK G G GAL P + L PL GGGQE+GLR+GT A
Sbjct: 181 LCGKAPLYPRRLGVDLLTVSAHKFRGPKGIGALIRNPRLTLAPLRLGGGQESGLRAGTPA 240
Query: 238 TPAIAGFGVAAELAAQELETETGRLI-----LLRDRLFAILADVPGLIPTGDKIHRLPHH 292
P + GFGVAA+ A + LE ++ L LR++L++I PG+ PTG RLP H
Sbjct: 241 VPLVVGFGVAAQEAMRALEKQSEPLWQRWTRQLREQLWSI----PGIEPTGHPEERLPGH 296
Query: 293 LSFYLEAADGEKISGKTLVRQLNLAGIGISAGAACNSGKLSPSPILLAMGYSQKAALGGI 352
+S + GE + G +VR L+ G +S+G+AC SG PSP+LLAMG A G+
Sbjct: 297 ISCLVGTPGGEPLEGSQVVRALDDCGYAVSSGSACRSGSAQPSPVLLAMGIDPARARSGL 356
Query: 353 RLTLGKQTTAAD-------IDWTGIVVKQILQRLIP 381
RL LG D + VV+Q+ RL P
Sbjct: 357 RLCLGSWLCEGDTAVVEDRLRELPQVVRQLCCRLTP 392
>TQ37_06065 cysteine desulfurase
Length = 430
Score = 90.1 bits (222), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 146/349 (41%), Gaps = 29/349 (8%)
Query: 3 VYLDYSATTPTRPEAI-AIIQTILTQQWGNPSSLHEWGNRAALILETARMQVAGLINAV- 60
VY+D++AT+ + I A+++ H RA E+AR VA + A
Sbjct: 37 VYMDHAATSQKPRQVIDALVEYYRCHNANVHRGAHTLSARATEAFESARATVARFVGAAN 96
Query: 61 PESIIFTSGGTEADNLAIMGVARCYTTP-QHMIISSVEHSAISEPAKMLENWGWEITR-L 118
I+F+ TEA NL A + P +++S +EH + P +++ + R +
Sbjct: 97 AREIVFSRNATEAINLVAYSWALDHLKPGDEVVLSVMEHHSNLVPWQLMARRSGAVLRHV 156
Query: 119 GVNHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQV 178
G+ QG ++ + K L T LVS ++ + +G + P AE+ + GA D Q
Sbjct: 157 GITSQGEMDVDHFKQLLNERTRLVSFVHLSNTLGCLNPAAEITAMAHGVGARVLVDGCQA 216
Query: 179 AGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGV--ELMPLLGGGGQEN--GLRSG 234
P+DVQ L D S HKL G G G L+ R + + P LGGG L
Sbjct: 217 LSHRPVDVQALGCDWYVGSGHKLCGPTGIGFLWGREDLLEAMTPFLGGGEMIAVVQLEKS 276
Query: 235 TQA---------TPAIA-GFGVAAE---LAAQELETETGRLILLRDRLFAILADVPGLIP 281
T A TPAIA G+AA L+A LE L LF L V GLI
Sbjct: 277 TWAELPHKFEAGTPAIAEAIGLAAALDYLSALGLEKIHAWEQQLTQHLFDRLQAVDGLII 336
Query: 282 TGDKIHRLPHH---LSFYLEAADGEKISGKTLVRQLNLAGIGISAGAAC 327
G P SF + A ++ L+ GI I +G C
Sbjct: 337 YGPDPREQPDRGALASFTVAGAHAHDVAAL-----LDSTGICIRSGDHC 380
>TQ37_05320 alanine--glyoxylate aminotransferase
Length = 390
Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 137 HNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGRLPLDVQTLPVDLLSL 196
H L+ +I+ ++ G +QP+ +G+ + HGAL D V G +PL + VD+
Sbjct: 152 HQPRLLGLIHAETSAGVLQPMDGVGEACRRHGALLLLDTVTSLGGVPLFLDRWGVDMSYS 211
Query: 197 SSHK 200
S K
Sbjct: 212 CSQK 215
>TQ37_09935 cysteine lyase
Length = 381
Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 10/177 (5%)
Query: 45 ILETARMQVAGLINAVPESIIFTSGGTEADNLAIMGVARCYTTPQHMIISSVEHS-AISE 103
++ + R +A L P+ + FT T L + G+ + ++I EH ++
Sbjct: 50 LVTSLRQALAALCGVPPQRLAFTENVTSGCVLPLWGLP--WRAGDQLLIGDGEHPGVVAT 107
Query: 104 PAKMLENWGWEITRLGVNHQGRVNP--EDLKAALRHNTVLVSVIYGQSEIGTVQPIAELG 161
++ ++ L V E L+ AL+ T LV + + G PI +G
Sbjct: 108 CHEIARRESLDVETLPVRDCATAEQVLERLEEALQPRTRLVVLSHLLWTTGLAVPIPAVG 167
Query: 162 KITKTHG--ALFHTDAVQVAGRLPLDVQTLPVDLLSLSSHK-LYG--GLGAGALYLR 213
+ + H D Q AG +PL+ DL + + HK L G GLGA AL R
Sbjct: 168 QRLRQHANRPWLVVDGAQSAGSVPLEDAVAAADLYAFTGHKWLCGPEGLGAMALSRR 224
>TQ37_05310 pyridoxal-dependent decarboxylase
Length = 452
Score = 28.9 bits (63), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 65 IFTSGGTEADNLAIMGV--ARCYTTPQHMIISSVE-HSAISEPAKMLENWGWEITRLGVN 121
I SGGT A++ R Q + +S + H+++++ +++ + + +
Sbjct: 140 IMASGGTVCTITALVTARHQRGLDEQQACLYASADCHNSLAKALRVMGLPAANLRLVPTD 199
Query: 122 HQGRVNPEDLKAALRHNT---VLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTD 174
GR++P L AL T + V G + G V PI + I + G H D
Sbjct: 200 ATGRLDPHRLDQALARETEPILAVVATAGTTIRGAVDPIGPIADICRRRGLWLHVD 255
>TQ37_03265 DNA-directed RNA polymerase subunit alpha
Length = 314
Score = 28.1 bits (61), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 88 PQHMIISSVEHSAISEPAKMLENWGWEITRLGVNHQGRVNPEDLKAALRHNTVLVSVIYG 147
P +I SV+ SA+ E EN EIT G ++P+D A + +L+
Sbjct: 174 PVRRVIYSVDESAVGEGGSASENLRLEITT-----NGSISPDDAIAQAANQLILL----- 223
Query: 148 QSEIGTVQPIAELG 161
QP+A LG
Sbjct: 224 ------FQPLASLG 231
Database: GCA_001007635.1P
Posted date: Aug 27, 2016 10:28 PM
Number of letters in database: 530,212
Number of sequences in database: 1878
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1878
Number of Hits to DB: 434,610
Number of extensions: 19810
Number of successful extensions: 72
Number of sequences better than 1.0: 7
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 7
Length of query: 382
Length of database: 530,212
Length adjustment: 79
Effective length of query: 303
Effective length of database: 381,850
Effective search space: 115700550
Effective search space used: 115700550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)