BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= AA650_17280 cysteine desulfurase
(382 letters)
Database: GCA_000012525.1P
2661 sequences; 809,802 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Synpcc7942_1929 cysteine desulfurase 418 e-145
Synpcc7942_2558 cysteine desulfurase NifS 291 7e-96
Synpcc7942_1738 cysteine desulfurase 89 2e-20
Synpcc7942_B2661 cysteine desulfurase 80 2e-17
Synpcc7942_1255 L-cysteine/cystine lyase 69 7e-14
Synpcc7942_2310 conserved hypothetical protein, L-2,4-diaminobut... 33 0.014
Synpcc7942_2160 alanine-glyoxylate aminotransferase 32 0.029
Synpcc7942_0191 Serine--glyoxylate transaminase 29 0.31
>Synpcc7942_1929 cysteine desulfurase
Length = 386
Score = 418 bits (1075), Expect = e-145, Method: Compositional matrix adjust.
Identities = 226/379 (59%), Positives = 272/379 (71%), Gaps = 2/379 (0%)
Query: 1 MQVYLDYSATTPTRPEAIAIIQTILTQQWGNPSSLHEWGNRAALILETARMQVAGLINAV 60
M YLDYSATT RPE + + +QWGN +SLH+WGNRAAL+LE +R QVA LI A
Sbjct: 1 MSTYLDYSATTSMRPEVLERFTAVAQEQWGNAASLHQWGNRAALVLERSRQQVAALIQAE 60
Query: 61 PESIIFTSGGTEADNLAIMGVARCYTTPQHMIISSVEHSAISEPAKMLENWGWEITRLGV 120
PE+I F+SGGTE+DN AI+ P H+IIS+VEHSAI+ PA LE GW++TRL V
Sbjct: 61 PEAIAFSSGGTESDNWAILSPYLADPRPGHLIISAVEHSAIARPAAWLEQRGWQVTRLPV 120
Query: 121 NHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAG 180
+ GR+ P DL +A+R +T L+SVI+GQSE+GT+QPIAEL I + HG LFHTDAVQVAG
Sbjct: 121 DRSGRIQPADLASAVRPDTRLISVIWGQSEVGTIQPIAELAAIAREHGILFHTDAVQVAG 180
Query: 181 RLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGVELMPLLGGGGQENGLRSGTQATPA 240
RLP+DVQ LP+DLLSLSSHKLYG G GALY+RPGVEL PLL GG QE+GLRSGT A
Sbjct: 181 RLPIDVQRLPIDLLSLSSHKLYGPQGVGALYIRPGVELAPLLQGGNQESGLRSGTPPIAA 240
Query: 241 IAGFGVAAELAAQELETETGRLILLRDRLFAILADVPGLIPTGDKIHRLPHHLSFYLEAA 300
IA FG AA+LAA EL ET RL LRDRL A+LA P L TGD I RLPHH SF A
Sbjct: 241 IAAFGEAAQLAAAELPHETARLQSLRDRLIAVLATEPRLRLTGDPIQRLPHHASFI--AR 298
Query: 301 DGEKISGKTLVRQLNLAGIGISAGAACNSGKLSPSPILLAMGYSQKAALGGIRLTLGKQT 360
G + + LVR +N G GIS G+ACNSG+ PSP+LLAMGYS + AL GIR +LG+ T
Sbjct: 299 GGTTGTSQQLVRAMNRLGFGISGGSACNSGRSQPSPVLLAMGYSPQEALAGIRFSLGRST 358
Query: 361 TAADIDWTGIVVKQILQRL 379
A+++ I ++ L L
Sbjct: 359 QLAEVEAAAIALRSALHSL 377
>Synpcc7942_2558 cysteine desulfurase NifS
Length = 388
Score = 291 bits (746), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 168/368 (45%), Positives = 226/368 (61%), Gaps = 8/368 (2%)
Query: 3 VYLDYSATTPTRPEAIAIIQTILTQQWGNPSSL-HEWGNRAALILETARMQVAGLINAVP 61
+YLDY ATTP + +Q +Q+GNP+S H +G AA ++ AR +A I A P
Sbjct: 6 IYLDYHATTPVDSRVVTAMQPFWGEQFGNPASRSHRYGLEAAAAVQVARETLATAIAAQP 65
Query: 62 ESIIFTSGGTEADNLAIMGVARC-YTTPQHMIISSVEHSAISEPAKMLENWGWEITRLGV 120
E +IF SG TEA+NLAI GVA + QH+I + EH A+ P + LE+ G+++T L V
Sbjct: 66 EELIFCSGATEANNLAIKGVAETQHRKGQHLITVATEHQAVLSPCRYLESLGFQLTVLPV 125
Query: 121 NHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAG 180
N QG ++ E + AALR +T+LVSV+ +EIG +QPIA +G + + G +FH DA Q G
Sbjct: 126 NSQGLISVEQVAAALRPDTILVSVMAANNEIGVLQPIAAIGALCRDRGVVFHCDAAQALG 185
Query: 181 RLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGVELMPLLGGGGQENGLRSGTQATPA 240
R+P +V L VDLLSLS HK+YG G G LY R GV + P L GG QE GLR+GT A
Sbjct: 186 RIPFNVSDLNVDLLSLSGHKVYGPKGIGLLYRRSGVAIAPQLHGGSQEQGLRAGTLAPAL 245
Query: 241 IAGFGVAAELAAQELETETGRLILLRDRLFAILADVPGLIPTGDKIHRLPHHLSFYLEAA 300
I GF A ELA E TET RL LRDRL+ L + GL GD RLP +L+F +E
Sbjct: 246 IVGFAQATELAIAEQPTETLRLQTLRDRLWQGLQAIGGLHLNGDPQQRLPSNLNFSIEGI 305
Query: 301 DGEKISGKTLVRQLNLAGIGISAGAACNSGKLSPSPILLAMGYSQKAALGGIRLTLGKQT 360
D + L++++ A I +S+G+AC+SG PS +L A+G S A +R+ LG+ T
Sbjct: 306 DPSR-----LIQRIRGA-IAVSSGSACSSGNAEPSHVLTAIGRSPDLAHASLRIGLGRFT 359
Query: 361 TAADIDWT 368
A +ID T
Sbjct: 360 IAEEIDRT 367
>Synpcc7942_1738 cysteine desulfurase
Length = 419
Score = 88.6 bits (218), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 12/232 (5%)
Query: 3 VYLDYSATTPTRPEAIAIIQTILTQQWGNPSSLHE----WGNRAALILETARMQVAGLIN 58
VYLD +AT+ +P A+ IQ+++ G S++H +A E AR +VA IN
Sbjct: 30 VYLDNAATS-QKPRAV--IQSLVDYYEGYNSNVHRGVHTLSGKATDAYEGARQKVARFIN 86
Query: 59 AVPE-SIIFTSGGTEADNLAIMGVARCYTTP-QHMIISSVEHSAISEPAKMLE-NWGWEI 115
A E I++T +EA NL + +I+S++EH + P + + G +
Sbjct: 87 AKTEQEIVYTRNASEAINLVAYSFGMNFLQAGDEIILSAMEHHSNLIPWQFVAAKTGAAL 146
Query: 116 TRLGVNHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDA 175
+GV G+ + E ++ L T LVSV++ + +G P+ E+ ++ GA DA
Sbjct: 147 KFVGVTETGQFDLEQFRSLLSDRTKLVSVVHVSNTLGCCNPVTEICQLAHAKGARVLIDA 206
Query: 176 VQVAGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGV--ELMPLLGGG 225
Q +DVQ + D L S HK+ G G LY + + ++ P LGGG
Sbjct: 207 CQSLPHQAIDVQAIDCDWLVGSGHKMCAPTGIGFLYGKLDLLRQMPPFLGGG 258
>Synpcc7942_B2661 cysteine desulfurase
Length = 626
Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 171/402 (42%), Gaps = 54/402 (13%)
Query: 3 VYLDYSATTPTRPEAIAIIQTILTQQWGNPSS-----LHEWGNRAALILETARMQVAGLI 57
V+ D +ATT +P+ ++ L+ + + +S HE R+ E AR QV +
Sbjct: 243 VWFDNAATT-QKPQ---VVIDRLSHYYQHENSNIHRAAHELAARSTDAYEAAREQVRHFL 298
Query: 58 NAVP-ESIIFTSGGTEADNLAIMGVARCYTTPQ-----HMIISSVEHSAISEPAKMLE-N 110
NA E ++F G TEA NL VA+ + + ++I+ +EH A P + L
Sbjct: 299 NAASTEEVVFVRGTTEAINL----VAKSWGSQNLKEGDEIVITWLEHHANIVPWQQLSAE 354
Query: 111 WGWEITRLGVNHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGAL 170
G + + V+ G+V ++ + L T +VS + +GT+ P E+ ++ +GA
Sbjct: 355 TGARLRVVPVDDYGQVRLDEYQKLLSDRTKIVSFTQVSNALGTITPAKEIIELAHRYGAK 414
Query: 171 FHTDAVQVAGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGV--ELMPLLGGGGQE 228
D Q L +DVQ L D S HK++G G G LY + + +P GG
Sbjct: 415 VLLDGAQSVSHLAVDVQALDCDWFVFSGHKVFGPTGIGVLYGKQELLDATLPWQSGGNMI 474
Query: 229 NGL---RSGTQATPAI--AGFGVAAEL----AAQELETETG--RLILLRDRLF----AIL 273
+ ++ Q PA AG G A+ AA E + G + L A+L
Sbjct: 475 ADVTFEKTVYQPAPARFEAGTGNIADAVGLGAALEYVQKIGLEAIAAYEHELLVHGTALL 534
Query: 274 ADVPGLIPTGDKIHRLPHHLSFYLEAADGEKISGKTLVRQLNLAGIGISAGAACNSGKLS 333
+ +PGL G H+ LSF LE E I + LN GI + AG C
Sbjct: 535 SQIPGLRLIGTAPHKA-AVLSFVLEGFSPEAIG-----QALNREGIAVRAGHHCA----- 583
Query: 334 PSPILLAMGYSQKAALGGIRLTLGKQTTAADIDWTGIVVKQI 375
PIL G +R +L T +++ +++I
Sbjct: 584 -QPILRRFGLETT-----VRPSLAFYNTFEELETLAAAIRRI 619
>Synpcc7942_1255 L-cysteine/cystine lyase
Length = 387
Score = 68.9 bits (167), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 11/220 (5%)
Query: 2 QVYLDYSATTPTRPEAIAIIQTIL--TQQWGNPSSLHEWGNRAALILETARMQVAGLINA 59
+ Y +Y P A+ IQT +QQ G P SL G R I + R +A L+
Sbjct: 19 KAYFNYGGQGPLSTAALTAIQTAFADSQQLG-PFSLAT-GQRVEQISDRLRTDLAALLQT 76
Query: 60 VPESIIFTSGGTEADNLAIMGVARCYTTPQHMIISSVEH-SAISEPAKMLENWGWEITRL 118
E+I T + N+A+ GV + ++I+ EH S I+ + + +G E+
Sbjct: 77 QSENITLTENVSVGCNIALWGVD--WQAGDRLLITDCEHPSVIATAQAIAQRFGVELDIW 134
Query: 119 GVNHQ---GRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDA 175
+ G+ E A L T L ++ + GTV P+A + + L D
Sbjct: 135 PLQAAVVAGQDLTEAFAAQLNSRTRLAAISHVLWNYGTVLPLAAIAEQAHRQDCLLLVDG 194
Query: 176 VQVAGRLPLDVQTLPVDLLSLSSHK-LYGGLGAGALYLRP 214
Q G LPLD+ VD + + HK L G G G LY RP
Sbjct: 195 AQSVGLLPLDLPATGVDFYAFTGHKWLCGPEGVGGLYSRP 234
>Synpcc7942_2310 conserved hypothetical protein, L-2,4-diaminobutyrate decarboxylase
Length = 489
Score = 33.5 bits (75), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 91 MIISSVEHSAISEPAKMLENWGWEITRLGVNHQGRVN----PEDLKAALRHNTVLVSVIY 146
+ S H++I + A +L + + + +GR+ E + +A R ++
Sbjct: 184 LFASEAAHTSIQKAAMLLGLGSQAVIPIATDRRGRMQVAALTEAIASARRQGQRPFCLVA 243
Query: 147 --GQSEIGTVQPIAELGKITKTHGALFHTDA 175
G + G++ P+ EL I +T G FH DA
Sbjct: 244 TAGTTVTGSIDPLPELSAIARTEGLWFHVDA 274
>Synpcc7942_2160 alanine-glyoxylate aminotransferase
Length = 384
Score = 32.3 bits (72), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 130 DLKAALR-HNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGRLPLDVQT 188
+L+ AL H ++++++ ++ G QP+A +G + + L D V G +P +
Sbjct: 139 ELRQALEEHRPQILALVHAETSTGAEQPLAGVGDLCREFDCLLLIDTVTSLGAVPTLLDE 198
Query: 189 LPVDLLSLSSHK 200
VDL S K
Sbjct: 199 WGVDLAYSCSQK 210
>Synpcc7942_0191 Serine--glyoxylate transaminase
Length = 382
Score = 29.3 bits (64), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 106 KMLENWGWEITRLGVNHQGRVNPEDLKAALRHNT----VLVSVIYGQSEIGTVQPIAELG 161
K+ + +G ++ + ++PE ++A L +T V + + ++ G + + +
Sbjct: 95 KLAQAFGLDVDLVQAPWGKPLDPEAIRAKLEADTDKQIKAVILTHSETSTGVINDLETIS 154
Query: 162 KITKTHGALFHTDAVQVAGRLPLDVQTLPVDLLSLSSHKLY 202
+ HGAL DAV G + + +D+++ S K Y
Sbjct: 155 GYIRAHGALSIVDAVTSLGAANVPIDAWGLDVVASGSQKGY 195
Database: GCA_000012525.1P
Posted date: Aug 27, 2016 10:53 PM
Number of letters in database: 809,802
Number of sequences in database: 2661
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2661
Number of Hits to DB: 651,844
Number of extensions: 29061
Number of successful extensions: 116
Number of sequences better than 1.0: 9
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 9
Length of query: 382
Length of database: 809,802
Length adjustment: 82
Effective length of query: 300
Effective length of database: 591,600
Effective search space: 177480000
Effective search space used: 177480000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)