cyanobase / GCA_001277295.1 - AA650

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= AA650_17280 cysteine desulfurase (382 letters) Database: GCA_000012505.1P 2304 sequences; 665,835 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Syncc9902_2109 NifS-like aminotransferase class-V 229 2e-72 Syncc9902_1108 possible cysteine desulfurase (class-V aminotrans... 222 5e-69 Syncc9902_0407 cysteine desulfurase 94 3e-22 Syncc9902_1263 alanine-glyoxylate aminotransferase 42 1e-05 Syncc9902_1410 DNA helicase/exodeoxyribonuclease V, beta subunit 28 0.46 511b0d0d3ae4be102c74031ee1fef2c9

>Syncc9902_2109 NifS-like aminotransferase class-V Length = 354 Score = 229 bits (585), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/343 (40%), Positives = 205/343 (59%), Gaps = 11/343 (3%) Query: 26 TQQWGNPSSL-HEWGNRAALILETARMQVAGLINAVPESIIFTSGGTEADNLAIMGVARC 84 + WGNPSS H G A+ + AR Q+A ++ P +IFTSG TEA+NLA++G AR Sbjct: 6 SDHWGNPSSRQHRQGLTASAAVALARRQIAEALDIDPNRLIFTSGATEANNLALLGHART 65 Query: 85 YTTPQHMIISSVEHSAISEPAKMLENWGWEITRLGVNHQGRVNPEDLKAALRHNTVLVSV 144 + H+I + EH A+ +P L+ G++++ L G + P L+ A+R +T LVSV Sbjct: 66 HGC-GHVISVNTEHHAVLDPLAQLQREGFQVSLLQAQSNGLITPAQLEEAIRPDTRLVSV 124 Query: 145 IYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGRLPLDVQTLPVDLLSLSSHKLYGG 204 + +EIG +QP+ EL +I + G +FH+DA Q G +PL+ L +DL+SLS+HKLYG Sbjct: 125 MAANNEIGVLQPLKELAEICRNRGVVFHSDAAQAFGHIPLEPDNLGLDLVSLSAHKLYGP 184 Query: 205 LGAGALYLRPGVELMPLLGGGGQENGLRSGTQATPAIAGFGVAAELAAQELETETGRLIL 264 G GAL +R GV+L PL GGGQE GLR+GT +P I GF A + A + + RL Sbjct: 185 KGIGALVIREGVQLQPLQWGGGQEAGLRAGTLPSPLIVGFAAAVQEAMADRDERHTRLGG 244 Query: 265 LRDRLFAILAD-VPGLIPTGDKIHRLPHHLSFYLEAADGEKISGKTLVRQLNLAGIGISA 323 LRD L+ L D +P + G RL ++L+ L +SG L R L + S+ Sbjct: 245 LRDELWNGLNDQLPAVERNGAAAPRLANNLNITLPG-----MSGSRLHRSLR-PHLACSS 298 Query: 324 GAACNSGKLSPSPILLAMGYSQKAALGGIRLTLGKQTTAADID 366 G+AC++G +PS +LLA+G S+ A +RL+LG+ TTA ++ Sbjct: 299 GSACSNG--APSHVLLAIGRSRADAEASLRLSLGRSTTANAVE 339 >Syncc9902_1108 possible cysteine desulfurase (class-V aminotransferase family) Length = 392 Score = 222 bits (565), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 9/364 (2%) Query: 2 QVYLDYSATTPTRPEAIAIIQTILTQQWGNPSSLHEWGNRAALILETARMQVAGLINAVP 61 ++YLD +ATTP R + I I + WGNPSSLH G +AA +LE R ++A VP Sbjct: 7 EIYLDAAATTPPRSDVIEAIVEAQRKAWGNPSSLHNTGVKAAELLERLRWELAQRFAVVP 66 Query: 62 ESIIFTSGGTEADNLAIMGVARCYTTPQHMIISSVEHSAISEPAKMLENWGWEITRLGVN 121 + +IFTSG TE+ +LAI+G A TP +++S VEH A+ A L+N GW + V+ Sbjct: 67 DQLIFTSGATESVHLAIVGSA-AKLTPGRIVVSGVEHPAVLAAANQLKNKGWTVAFWPVD 125 Query: 122 HQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGR 181 G + E L+ L T +VS+I QSE+G +QP +G+ + G FH+DA Q+ + Sbjct: 126 ALGLIRLECLEELLAEPTRMVSLIAAQSEVGALQPTDVVGQACRARGITFHSDATQLIPQ 185 Query: 182 LPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPGVELMPLLGGGGQENGLRSGTQATPAI 241 + DL+SLS+HK G G G L R + L P+ GGGGQE GLRSGT+A P I Sbjct: 186 GCPEFNHFQSDLVSLSAHKFQGPRGIGLLIRRSNLSLSPVQGGGGQEFGLRSGTEALPLI 245 Query: 242 AGFGVA-AELAAQELETET------GRLILLRDRLFAILADVPGLIPTGDKI-HRLPHHL 293 AG A + L A L +T + RD L L ++ GL G + R P+H+ Sbjct: 246 AGMAQALSVLPAYHLSGDTVPPGSGADVRRQRDDLLQELLEIQGLSLLGPNVTQRSPNHI 305 Query: 294 SFYLEAADGEKISGKTLVRQLNLAGIGISAGAACNSGKLSPSPILLAMGYSQKAALGGIR 353 + + +A G+ +S + +VR+L G+ S+G+AC SG+ S +L AM + G+R Sbjct: 306 AVLVGSAGGQPLSARAMVRELARRGVACSSGSACRSGQRQDSSVLTAMNVPEPWRQSGLR 365 Query: 354 LTLG 357 TLG Sbjct: 366 FTLG 369 >Syncc9902_0407 cysteine desulfurase Length = 428 Score = 93.6 bits (231), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 13/234 (5%) Query: 3 VYLDYSATTPTRPEAIAIIQTILTQQWGN-PSSLHEWGNRAALILETARMQVAGLINA-V 60 +YLD++AT+ + I +Q + N H+ RA E+AR AG + A Sbjct: 40 IYLDHAATSQKPQQVIDAMQRYYSCDNANVHRGAHQLSARATESFESARTTAAGFVGAHS 99 Query: 61 PESIIFTSGGTEADNLAIMGVARCYTTP-----QHMIISSVEHSAISEPAKML-ENWGWE 114 P I+FT +EA NL VAR + ++++ +EH + P ++L + G Sbjct: 100 PREIVFTRNASEAINL----VARSWGDSTLHEGDEVLLTVMEHHSNLVPWQLLAQRTGCV 155 Query: 115 ITRLGVNHQGRVNPEDLKAALRHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTD 174 + +G+ GR++ ED + L T LVS+++ + +G P+ + GAL D Sbjct: 156 LRHVGITDDGRLDLEDFQEKLSERTRLVSLVHISNTLGCCNPLESVIPAAHAVGALVLVD 215 Query: 175 AVQVAGRLPLDVQTLPVDLLSLSSHKLYGGLGAGALYLRPG-VELMPLLGGGGQ 227 A Q +DV L D L SSHKL G G G L+ R +E MP GGG+ Sbjct: 216 ACQSLAHQSIDVVALEADFLVGSSHKLCGPTGMGFLWARETLLEAMPPFLGGGE 269 >Syncc9902_1263 alanine-glyoxylate aminotransferase Length = 394 Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 129 EDLKAAL-RHNTVLVSVIYGQSEIGTVQPIAELGKITKTHGALFHTDAVQVAGRLPLDVQ 187 ++L+AAL H ++++++ ++ G QP+ +G + + H L D V G +PL + Sbjct: 140 DELEAALIEHKPAMLAIVHAETSTGVCQPMEGVGDLCRKHDCLLLLDTVTSLGGVPLYID 199 Query: 188 TLPVDL-LSLSSHKLYGGLGAGALYLRPGVE 217 VDL S S L G G + P E Sbjct: 200 EWKVDLAYSCSQKGLSCPPGLGPFTMGPRAE 230 >Syncc9902_1410 DNA helicase/exodeoxyribonuclease V, beta subunit Length = 1208 Score = 28.5 bits (62), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 273 LADVPGLIPTGDKIHRLPHHLSFYLEAADGEKISGKTLVRQLNLAGIGISAGAACNSGKL 332 LAD P GD +HR+ + + +AAD + S +R + AG CN + Sbjct: 936 LADFPRGAVAGDCLHRILEQIPY--QAADADDPSLLDSLRAAVIDSELRRAGLDCNLQSM 993 Query: 333 SPSPILLAMGYSQKAALGG 351 ++ +GY K LGG Sbjct: 994 ----VMEGLGYVLKTPLGG 1008 Database: GCA_000012505.1P Posted date: Aug 27, 2016 11:01 PM Number of letters in database: 665,835 Number of sequences in database: 2304 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2304 Number of Hits to DB: 536,222 Number of extensions: 24123 Number of successful extensions: 88 Number of sequences better than 1.0: 5 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 5 Length of query: 382 Length of database: 665,835 Length adjustment: 80 Effective length of query: 302 Effective length of database: 481,515 Effective search space: 145417530 Effective search space used: 145417530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)