cyanobase / GCA_000153285.1 - WH7805

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= WH7805_12733 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (462 letters) Database: GCA_000412595.1P 5241 sequences; 1,467,090 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MAESPC_00271 UDP-N-acetylmuramoylalanine--D-glutamate ligase 349 e-116 MAESPC_04633 UDP-N-acetylmuramoylalanine--D-glutamate ligase 349 e-116 MAESPC_00436 UDP-N-acetylmuramate--L-alanine ligase 54 2e-08 MAESPC_02991 UDP-N-acetylmuramate--L-alanine ligase 54 2e-08 MAESPC_03832 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-dia... 42 8e-05 MAESPC_03033 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-dia... 42 8e-05 MAESPC_03804 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanin... 41 1e-04 MAESPC_02433 UDP-N-acetylmuramate--L-alanine ligase 39 8e-04 MAESPC_04911 Cyanophycin synthetase 38 0.002 MAESPC_00717 Folylpolyglutamate synthase 32 0.13 MAESPC_02123 Putrescine oxidase 31 0.24 MAESPC_03758 Putrescine oxidase 29 0.75 47f915f4100a754a7acc2a14eca98104

>MAESPC_00271 UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 449 Score = 349 bits (896), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/458 (43%), Positives = 280/458 (61%), Gaps = 16/458 (3%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M+++ ++GLGRSG AAR L+ G+ V + +R D P+L+ L ++ I + LG L L Sbjct: 1 MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLEREGIMVNLGQNLSL 60 Query: 61 DSFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNG 120 ++ D +V+SPG+ WD L R G GE+ +AW L+ PW+GITGTNG Sbjct: 61 EAS----DLPNLIVVSPGVPWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNG 116 Query: 121 KTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAA 180 KTT T L + AGL AP GN+GY+A ELAL+ K DW++ E+SSYQIE++ Sbjct: 117 KTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKA-----DKYDWIIAEISSYQIESSR 171 Query: 181 EVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQ-HCGHWSRS 239 +++P+IGIWTT TPDHL RH T+E Y IK LL+RS+ +LN DD +RQ W ++ Sbjct: 172 DLAPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQA 231 Query: 240 CIRWVSCGDHSPEGGNPQLTVNAQ-GWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAAL 298 W S G+P V Q W+ + + P + L + G HN+QN+L+ AAA Sbjct: 232 --YWTSVKGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAAR 289 Query: 299 AAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQAPVVLL 358 AG+ I A+ F GV HRLE + + G+ NDSKATNYDAAAVGL+SV +P +L+ Sbjct: 290 LAGIEKKAITEAIATFPGVAHRLECICTYKGLDFINDSKATNYDAAAVGLQSVPSPAILI 349 Query: 359 AGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCAD-LDSAVSQ 417 AGG+ K GD W+ I+++VA V+L G+ A + A ++++G+ C + +D AV + Sbjct: 350 AGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQD--YECVETMDRAVQR 407 Query: 418 ALSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQL 455 A L +A VLLSPACASFDQY +FE RGDHFRQL Sbjct: 408 AAELGLAKEAKVVLLSPACASFDQYQSFEHRGDHFRQL 445 >MAESPC_04633 UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 449 Score = 349 bits (896), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/458 (43%), Positives = 280/458 (61%), Gaps = 16/458 (3%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M+++ ++GLGRSG AAR L+ G+ V + +R D P+L+ L ++ I + LG L L Sbjct: 1 MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLEREGIMVNLGQNLSL 60 Query: 61 DSFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNG 120 ++ D +V+SPG+ WD L R G GE+ +AW L+ PW+GITGTNG Sbjct: 61 EAS----DLPNLIVVSPGVPWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNG 116 Query: 121 KTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAA 180 KTT T L + AGL AP GN+GY+A ELAL+ K DW++ E+SSYQIE++ Sbjct: 117 KTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKA-----DKYDWIIAEISSYQIESSR 171 Query: 181 EVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQ-HCGHWSRS 239 +++P+IGIWTT TPDHL RH T+E Y IK LL+RS+ +LN DD +RQ W ++ Sbjct: 172 DLAPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQA 231 Query: 240 CIRWVSCGDHSPEGGNPQLTVNAQ-GWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAAL 298 W S G+P V Q W+ + + P + L + G HN+QN+L+ AAA Sbjct: 232 --YWTSVKGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAAR 289 Query: 299 AAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQAPVVLL 358 AG+ I A+ F GV HRLE + + G+ NDSKATNYDAAAVGL+SV +P +L+ Sbjct: 290 LAGIEKKAITEAIATFPGVAHRLECICTYKGLDFINDSKATNYDAAAVGLQSVPSPAILI 349 Query: 359 AGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCAD-LDSAVSQ 417 AGG+ K GD W+ I+++VA V+L G+ A + A ++++G+ C + +D AV + Sbjct: 350 AGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQD--YECVETMDRAVQR 407 Query: 418 ALSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQL 455 A L +A VLLSPACASFDQY +FE RGDHFRQL Sbjct: 408 AAELGLAKEAKVVLLSPACASFDQYQSFEHRGDHFRQL 445 >MAESPC_00436 UDP-N-acetylmuramate--L-alanine ligase Length = 475 Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 107/275 (38%), Gaps = 30/275 (10%) Query: 72 EVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHV 131 +V+ S I + A R G+ + V + I + GT+GKTT + L+ +V Sbjct: 82 QVICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIADYDSIAVAGTHGKTTTSSLIGYV 141 Query: 132 LAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAAEVSPRIGIWTT 191 L AGL+ + A E + QG ++V E + + +P+IG+ T Sbjct: 142 LLEAGLDPTIIVGGEVDAWEGNARLGQGR-----FLVAEADESD-GSLTKHAPKIGVITN 195 Query: 192 LTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQHCGHWSRSCIRWVSCGDHSP 251 + DH + + + R ++ +I V D I +H R I + P Sbjct: 196 IELDHPDHYQNLSEVIDTFREFADQCQILVACLDCDTIAEHF----RPTISY----SLDP 247 Query: 252 EGGNPQLTVNAQGWVSRGEQHLFPAD-----------SLPLPGEHNRQNMLLVTAAALAA 300 E G TV+ + EQ + A + +PG+HN N L V A Sbjct: 248 EKG-ADYTVSEIIY----EQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYL 302 Query: 301 GVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 G+ + I A+ F G R E G GI +D Sbjct: 303 GLEFAVIADAIATFAGAKRRFEHKGEANGITFIDD 337 >MAESPC_02991 UDP-N-acetylmuramate--L-alanine ligase Length = 475 Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 107/275 (38%), Gaps = 30/275 (10%) Query: 72 EVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHV 131 +V+ S I + A R G+ + V + I + GT+GKTT + L+ +V Sbjct: 82 QVICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIADYDSIAVAGTHGKTTTSSLIGYV 141 Query: 132 LAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAAEVSPRIGIWTT 191 L AGL+ + A E + QG ++V E + + +P+IG+ T Sbjct: 142 LLEAGLDPTIIVGGEVDAWEGNARLGQGR-----FLVAEADESD-GSLTKHAPKIGVITN 195 Query: 192 LTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQHCGHWSRSCIRWVSCGDHSP 251 + DH + + + R ++ +I V D I +H R I + P Sbjct: 196 IELDHPDHYQNLSEVIDTFREFADQCQILVACLDCDTIAEHF----RPTISY----SLDP 247 Query: 252 EGGNPQLTVNAQGWVSRGEQHLFPAD-----------SLPLPGEHNRQNMLLVTAAALAA 300 E G TV+ + EQ + A + +PG+HN N L V A Sbjct: 248 EKG-ADYTVSEIIY----EQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYL 302 Query: 301 GVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 G+ + I A+ F G R E G GI +D Sbjct: 303 GLEFAVIADAIATFAGAKRRFEHKGEANGITFIDD 337 >MAESPC_03832 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Length = 496 Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 38/226 (16%) Query: 126 HLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQGTRPKPDWVVMEM 171 HL+++ L+ AG+ + G + G+ A EL + + + VME+ Sbjct: 126 HLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEIAVMEV 185 Query: 172 SSYQIEA--AAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEI---PVLNADD 226 SS+ + + + ++T LT DHL+ H +E Y A K L + ++N DD Sbjct: 186 SSHALVQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGKAIINLDD 245 Query: 227 ADIRQHCGHWSRSCIRWVSCGD----------HSPEGGNPQLTVNAQGWVSRGEQHLFPA 276 ++ S + S D H G + V QG + A Sbjct: 246 EYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPTGVEGVMVTPQGEI---------A 296 Query: 277 DSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 + PL G++N N+L AA L GV T+ + F+GVP R+E Sbjct: 297 FASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRME 342 >MAESPC_03033 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Length = 496 Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 38/226 (16%) Query: 126 HLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQGTRPKPDWVVMEM 171 HL+++ L+ AG+ + G + G+ A EL + + + VME+ Sbjct: 126 HLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEIAVMEV 185 Query: 172 SSYQIEA--AAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEI---PVLNADD 226 SS+ + + + ++T LT DHL+ H +E Y A K L + ++N DD Sbjct: 186 SSHALVQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGKAIINLDD 245 Query: 227 ADIRQHCGHWSRSCIRWVSCGD----------HSPEGGNPQLTVNAQGWVSRGEQHLFPA 276 ++ S + S D H G + V QG + A Sbjct: 246 EYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPTGVEGVMVTPQGEI---------A 296 Query: 277 DSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 + PL G++N N+L AA L GV T+ + F+GVP R+E Sbjct: 297 FASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRME 342 >MAESPC_03804 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase Length = 454 Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 88/224 (39%), Gaps = 32/224 (14%) Query: 104 WDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN----VGYSAAELALEVLQG 159 W IP I ITG+ GKTT L+ VLA G N +G L L+ Sbjct: 104 WRNQFTIPVIAITGSVGKTTTKELIASVLATRGKVHKTLANYNNEIGVPKTLLELD---- 159 Query: 160 TRPKPDWVVMEMSSY---QIEAAAEVS-PRIGIWTTLTPDHLERHGTIEAYRAIKRGLLE 215 D V+EM +I A+++ P I + T + H+ R G+ A K LL Sbjct: 160 --ETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAEAKCELLS 217 Query: 216 RS---EIPVLNADDADIRQHCGH-WSRSCIRW-VSCGDHSPEGGN-PQLTVNAQGWVSRG 269 S I VLN D + + W I + S GD E + L VN + Sbjct: 218 ESPSGSIAVLNYDHPLLTETAKRVWQGETITYGFSGGDIVGELLDLTTLRVNGLDF---- 273 Query: 270 EQHLFPADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRC 313 +LPL G H+ N + A A G+ ++++ ++ Sbjct: 274 --------NLPLSGRHHALNFMAALAVAKILGIDWTSLQQGIKV 309 >MAESPC_02433 UDP-N-acetylmuramate--L-alanine ligase Length = 445 Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 19/156 (12%) Query: 108 RGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNV-------GYSAAELALEVLQGT 160 RG+ I + GTNGKTT + LL+ +L G A + N G A LA L GT Sbjct: 56 RGV--ILVVGTNGKTTTSLLLRTILERQG--AKVTHNTTGANLINGLITALLADANLFGT 111 Query: 161 RPKPDWVVMEMSSYQIE-AAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGL---LER 216 K D+ ++E+ + + PR + L D L+R+G ++ +G L Sbjct: 112 L-KADYAILEVDENILPLVLKDCRPRAILALNLFRDQLDRYGEVDTISRRWQGAISPLPT 170 Query: 217 SEIPVLNADDADIRQHCGHWSRSCIRWVSCGDHSPE 252 + +LNADD + H G R V G PE Sbjct: 171 DTLVILNADDPTL-SHLGQQLPQ--RVVYFGLSEPE 203 >MAESPC_04911 Cyanophycin synthetase Length = 877 Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 88/239 (36%), Gaps = 39/239 (16%) Query: 110 IPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVM 169 +P + ITGTNGKTT + L+ H+ G G + +E +G P M Sbjct: 488 VPILAITGTNGKTTTSRLISHICRQTGKVVGFTTTDGVYIDDYLVE--KGDNTGPYSASM 545 Query: 170 EMSSYQIEAAAEVSPR--------------IGIWTTLTPDHL--ERHGTIEAYRAIKRGL 213 + +E A + R +G+ + DHL TIE +K + Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605 Query: 214 LERSE---IPVLNADD-------ADIRQHCGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQ 263 E VLNADD ++ ++S S + DH GG + N Sbjct: 606 AEVVSAEGYAVLNADDPLTVSMAEKVKGRVAYFSMSPDNPI-IHDHIRRGGMAAIYENGY 664 Query: 264 GWVSRGEQHLFPADSLPLPGEHNRQNML-LVTAAALAA-------GVSASTIEAALRCF 314 + GE L +++ +P Q M + A ALAA G+ I +R F Sbjct: 665 LSILEGEWTLRIEEAVNIP--VTMQGMAPFMIANALAACLATFVHGIDIELIRQGVRTF 721 >MAESPC_00717 Folylpolyglutamate synthase Length = 415 Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 95 RVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLE 138 R++ + + + IP I +TGTNGK +V L +L+ AG + Sbjct: 21 RIKNLLEILGNPQDKIPIIHVTGTNGKGSVCAYLSSILSTAGYK 64 >MAESPC_02123 Putrescine oxidase Length = 457 Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 2 SRSVVVGLGRSGSGAARLLQAQGYDVVVLERGD 34 R VV+G G SG AA+ L QG +VVV+E D Sbjct: 36 KRVVVIGAGLSGLAAAQELHRQGNEVVVVEARD 68 >MAESPC_03758 Putrescine oxidase Length = 460 Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust. Identities = 15/27 (55%), Positives = 20/27 (74%) Query: 5 VVVGLGRSGSGAARLLQAQGYDVVVLE 31 +VVG G +G AAR LQ QG+ V+V+E Sbjct: 12 IVVGAGLAGLIAARNLQRQGHQVLVIE 38 Database: GCA_000412595.1P Posted date: Aug 27, 2016 10:48 PM Number of letters in database: 1,467,090 Number of sequences in database: 5241 Lambda K H 0.319 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5241 Number of Hits to DB: 1,352,624 Number of extensions: 56850 Number of successful extensions: 195 Number of sequences better than 1.0: 14 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 16 Length of query: 462 Length of database: 1,467,090 Length adjustment: 87 Effective length of query: 375 Effective length of database: 1,011,123 Effective search space: 379171125 Effective search space used: 379171125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)