cyanobase / GCA_000153285.1 - WH7805

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= WH7805_12733 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (462 letters) Database: GCA_000300115.1P 9972 sequences; 2,716,567 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value FDUTEX481_09476 UDP-N-acetylmuramoylalanine--D-glutamate ligase 356 e-118 FDUTEX481_00115 putative UDP-N-acetylmuramoyl-tripeptide--D-alan... 58 9e-10 FDUTEX481_00956 putative UDP-N-acetylmuramoyl-L-alanyl-D-glutama... 57 3e-09 FDUTEX481_07896 UDP-N-acetylmuramate--alanine ligase 42 1e-04 FDUTEX481_00470 putative Mur ligase 39 9e-04 FDUTEX481_08453 putative amine oxidase 36 0.009 FDUTEX481_01772 Tat-translocated enzyme 30 0.49 FDUTEX481_01432 FAD dependent oxidoreductase 30 0.89 D3820143f27566e4c61a64dae9a9ad83

>FDUTEX481_09476 UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 461 Score = 356 bits (913), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/462 (45%), Positives = 279/462 (60%), Gaps = 20/462 (4%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M RS V+GLG+SG AARLL+ +G++VV+ + L + L +NIT++LG LE Sbjct: 1 MPRSAVIGLGKSGIAAARLLRREGWEVVLSDSNTSETLLKQQQELATENITVKLGYSLEF 60 Query: 61 DSFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNG 120 ++ D +V+SPG+ W+ L R G GEM +AW L+ PW+GITGTNG Sbjct: 61 NT----ADLPQLIVVSPGVPWEIPVLVQARELGIETIGEMELAWRYLQTPPWVGITGTNG 116 Query: 121 KTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAA 180 KTT T L+ + AGL+AP GN+GY+A E+AL Q PDWV+ E+SSYQIE++ Sbjct: 117 KTTTTALIAAIFQAAGLDAPACGNIGYAACEVALAAKQ-----PDWVIGEISSYQIESSV 171 Query: 181 EVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQ-HCGHWSRS 239 ++PRIG+WTT TPDHL RH T++ Y IK LL +S++ V N DDA + + W + Sbjct: 172 TLAPRIGVWTTFTPDHLSRHKTLDNYYKIKAQLLHKSQLQVFNGDDAYLSKVGLSDWPDA 231 Query: 240 CIRWVSCGDHSPEGGNPQLTVNAQGWV------SRGEQHLFPADSLPLPGEHNRQNMLLV 293 W S G+ + GWV + + + A +L + GEHN+QN+L+ Sbjct: 232 --YWTSVKGQDYLIGDKGFYIE-DGWVIEKLSATSTPEPIVEASALRMVGEHNQQNLLMA 288 Query: 294 TAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQA 353 AAA A + A I A+R F GV HRLE + + GI NDSKATNYDAA VGL SV++ Sbjct: 289 VAAARLAKIDADAISRAIREFPGVAHRLEHICTWEGIDFINDSKATNYDAAEVGLASVKS 348 Query: 354 PVVLLAGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLDS 413 P +L+AGG+ K GD WL IQ+Q A V+L G A A ++ G+A I +D Sbjct: 349 PAILIAGGEAKAGDDTGWLAKIQAQAAAVLLIGNAAPAFAQRLQEVGYANYKI-VETMDK 407 Query: 414 AVSQALSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQL 455 A+ QA LA+ QA VLLSPACASFDQYPNFE RGDHFRQL Sbjct: 408 AIPQAAELAKKHQATVVLLSPACASFDQYPNFEVRGDHFRQL 449 >FDUTEX481_00115 putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Length = 451 Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 22/213 (10%) Query: 110 IPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVM 169 IP IG+TG+ GKTT L+ VLA G GN + L P+ D+ V+ Sbjct: 107 IPVIGVTGSVGKTTTKELIAAVLATKGRVHKTYGNFNNEIG--VPKTLLELSPEHDYAVI 164 Query: 170 EMSSYQIEAAAEVS----PRIGIWTTLTPDHLERHGTIEAYRAIKRGLLE---RSEIPVL 222 EM+ AE++ P IG+ T + H+E G+ A K LL + + +L Sbjct: 165 EMAMRGKGQIAELTHIANPTIGVITNVGTAHIELLGSEAAIAQAKCELLAEMPKDSVAIL 224 Query: 223 NADDA-DIRQHCGHWSRSCIRW-VSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFPADSLP 280 N D+ I W I + +S GD S E ++ + Q P LP Sbjct: 225 NQDNPLLISTSAKVWQGKVITYGLSGGDISGE------IIDHETLAIEDIQ--LP---LP 273 Query: 281 LPGEHNRQNMLLVTAAALAAGVSASTIEAALRC 313 LPG HN N L A A G+ ++++A + Sbjct: 274 LPGRHNVTNFLAALAVARVVGIDWASLQAGVNV 306 >FDUTEX481_00956 putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Length = 498 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 40/227 (17%) Query: 126 HLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQGTRPKPDWVVMEM 171 HL+++ L+ L + G + G++ A EL ++ ++ VME+ Sbjct: 127 HLIEYFLSKENLPTALMGTLYTRWPGFAETAIHTTPFAVELQQQLAAAVDAGCEFGVMEV 186 Query: 172 SSYQIEAAAEV--SPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIP---VLNADD 226 SS+ + + +G+++ LT DHL+ H +E Y A K L + ++NADD Sbjct: 187 SSHALAQGRVLGCEFEVGVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLKGRAIINADD 246 Query: 227 ADIRQHCGH------WSRSCIR-----WVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFP 275 A ++ WS S W+S ++ P G + L R Sbjct: 247 AYGQRLIASLGADKVWSYSVNHTNADLWMSDLNYEPNGVSGTLHTPKGNVAFRS------ 300 Query: 276 ADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 PL G++N +N+L A L G+ + AA+ F GVP R+E Sbjct: 301 ----PLVGQYNLENLLAAVGAVLHLGLELDFVAAAIPDFPGVPGRME 343 >FDUTEX481_07896 UDP-N-acetylmuramate--alanine ligase Length = 487 Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 20/229 (8%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPM--AGNVGYSAAELALEVLQGTRPKPDWVVME 170 I + GT+GKTT + ++ ++L AGL+ + G V L + ++V E Sbjct: 137 IAVAGTHGKTTTSSMIGYMLLQAGLDPTILVGGEVNAWEGNARL-------GESRYLVAE 189 Query: 171 MSSYQIEAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIR 230 + + +P IG+ T + DH + + T+E I + + + + + D A +R Sbjct: 190 ADESD-GSLVKHAPAIGVITNIELDHPDHYETLEEVVNIFQEFAQGCQTLIGSIDCATVR 248 Query: 231 QHCGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQGWVS----RGEQHLFPADSLPLPGEHN 286 + I + D + + + A G + RG+ +L L G HN Sbjct: 249 DRL----KPTITYSLHPDSNADYTVTNIDYRADGTTALVWERGKA--LGMLNLRLLGRHN 302 Query: 287 RQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 N L A G+ I + F G R E G V GI +D Sbjct: 303 LSNALASVAVGRFVGLEFGEIAKGIATFEGARRRFEFRGEVDGITFIDD 351 >FDUTEX481_00470 putative Mur ligase Length = 446 Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 88/384 (22%), Positives = 137/384 (35%), Gaps = 84/384 (21%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRP----KPDWVV 168 I I GTNGKTT + LL+ +L G L ++ T D+ + Sbjct: 63 ILIAGTNGKTTTSLLLREILERQGYRVAHNSTGANLENGLMTALMDNTNILGSLDVDYAI 122 Query: 169 MEMSSYQI-EAAAEVSPRIGIWTTLTPDHLERHGTIEAY-----RAIKRGLLERSEIPVL 222 +E+ + A + P++ + L D L+R+G ++ +AI L I V Sbjct: 123 LEVDENILPRVLAPIQPKLILCLNLFRDQLDRYGEVDTISKRWGKAI--ATLSPDTIVVA 180 Query: 223 NADDADI--------RQHCGHWSRS-----------------CIRW-------------- 243 NADD I +Q + S C R Sbjct: 181 NADDPTICYLGQQLTQQRVSFFGLSEPEHYLEAIPHAVDSIYCPRCGKALDYKGVYLSHM 240 Query: 244 --VSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAALAAG 301 SCG+ P L N+ W L G +N+ N L AA G Sbjct: 241 GEYSCGNCGFSRSQPSL--NSSEWPQ------------ILVGLYNKYNTLAAATAAQELG 286 Query: 302 VSASTIEAALRCFTGVPHRLEPL---GSVGGIPVFNDSKATNYDAAAVGLRSVQAPVVLL 358 V A+TI + F R E L G I + + TN + V S +L+ Sbjct: 287 VEAATIRETIPNFQAAFGRAEELEINGKKVRILLSKNPVGTN-ETIRVVTESADKTTLLV 345 Query: 359 AGGQTKKGDAVPWL------KLIQSQVAGVVLFGEGAGELADLIETSGFAGP-----MIH 407 + + G+ V W+ KL+Q + +V+ G+ A ++A + S P +I Sbjct: 346 LNDRVQDGEDVSWIWDVDTEKLVQ-RGGTLVVSGDRAYDMALRLRYSD-PNPAQNFNLIV 403 Query: 408 CADLDSAVSQALSLARNCQANSVL 431 DL A++ AL N + +L Sbjct: 404 EEDLRQAINTALERTPNNETLHIL 427 >FDUTEX481_08453 putative amine oxidase Length = 503 Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 21/35 (60%) Query: 2 SRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEP 36 R VVVG G +G GA L QGYDV +LE G P Sbjct: 8 KRVVVVGAGWAGLGATYHLAKQGYDVTLLEAGPYP 42 >FDUTEX481_01772 Tat-translocated enzyme Length = 399 Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 280 PLPGEHNRQNMLLVTAAAL--AAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSK 337 P G H + +A+AL + V A T E +R F + R+E L VGG P DSK Sbjct: 31 PFFGVHQAGILTPASASALIVSFDVVAKTKEDLVRLFKTLTERIEFL-MVGGTPKIVDSK 89 Query: 338 ATNYDAAAVGLR 349 D+ +G + Sbjct: 90 LPPTDSGVLGTK 101 >FDUTEX481_01432 FAD dependent oxidoreductase Length = 520 Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust. Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 5 VVVGLGRSGSGAARLLQAQGYDVVVLER 32 V++G G G AA L QGY VVVLE+ Sbjct: 7 VILGAGLGGLSAAACLTKQGYRVVVLEK 34 Database: GCA_000300115.1P Posted date: Aug 27, 2016 10:45 PM Number of letters in database: 2,716,567 Number of sequences in database: 9972 Lambda K H 0.319 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9972 Number of Hits to DB: 2,485,399 Number of extensions: 103390 Number of successful extensions: 289 Number of sequences better than 1.0: 11 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 11 Length of query: 462 Length of database: 2,716,567 Length adjustment: 91 Effective length of query: 371 Effective length of database: 1,809,115 Effective search space: 671181665 Effective search space used: 671181665 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)