cyanobase / GCA_000153285.1 - WH7805

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= WH7805_12733 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (462 letters) Database: GCA_000284215.1P 3169 sequences; 1,030,668 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SYNPCCN_1136 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase 345 e-114 SYNPCCN_2850 murE UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-di... 77 5e-16 SYNPCCN_2928 murC UDP-N-acetylmuramate-alanine ligase 54 8e-09 SYNPCCN_1595 murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-dia... 54 9e-09 SYNPCCN_1822 slr0938 hypothetical protein 37 0.003 SYNPCCN_1322 folC folyl-polyglutamate synthetase 30 0.24 SYNPCCN_0365 sll1025 hypothetical protein 29 0.49 SYNPCCN_0512 sll1946 hypothetical protein 29 0.65 SYNPCCN_0889 slr1540 hypothetical protein 28 0.68 SYNPCCN_1270 pds phytoene desaturase 28 0.76 SYNPCCN_0983 recJ single-strand-DNA-specific exonuclease 28 0.93 1e664a73891e75554ee81783e6154977

>SYNPCCN_1136 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 452 Score = 345 bits (886), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/461 (43%), Positives = 275/461 (59%), Gaps = 24/461 (5%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M ++ V+GLGRSG AAR+L G+ V V ++ D LR L Q+ I+++LG Sbjct: 1 MPQACVIGLGRSGIAAARVLHRDGWQVTVFDQADNDQLRHMGQPLVQEGISLKLG----- 55 Query: 61 DSFTPWLDSAGE-VVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTN 119 D P ++ E +V+SPG+ WD L A R G V GE+ +AW L +PW+GITGTN Sbjct: 56 DRLDPVKEAWPERIVVSPGVPWDIPLLVAAREKGVEVTGELELAWQYLHAVPWVGITGTN 115 Query: 120 GKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAA 179 GKTT T L+Q + AGL AP GN+GY+A EL L+ DW+V E+SSYQIE++ Sbjct: 116 GKTTTTSLVQAIFQKAGLNAPACGNIGYAACELVLQ-----NQNYDWIVAEISSYQIESS 170 Query: 180 AEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQHC------ 233 ++P+IG+WTT TPDHL RH T+E Y IK LL RS I VLN DD + H Sbjct: 171 PTLAPQIGLWTTFTPDHLSRHKTLENYFNIKASLLSRSAIQVLNGDDPHLHSHGPNLYPQ 230 Query: 234 GHWSRSCIRWVSCGDHSPEGGNPQLTVNAQ-GWVSRGEQHLFPADSLPLPGEHNRQNMLL 292 HW+ + +H +P+ V Q WV+ + + P + +PG+HN+QN+L+ Sbjct: 231 AHWTST-----QGANHLAGLCDPKQGVYLQDNWVNAFGELIAPINLFKMPGQHNQQNLLM 285 Query: 293 VTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQ 352 AAA AG+ I L FTGVPHRLEP+ ++ G+ NDSKATNYDAA VGL S++ Sbjct: 286 AIAAARLAGIDKKAITETLLTFTGVPHRLEPICTINGVQFINDSKATNYDAAEVGLSSMK 345 Query: 353 APVVLLAGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLD 412 P +L+AGG+ K+GD WL I+ + V+L G+ A A ++ G+ I + Sbjct: 346 GPTILIAGGEAKEGDDQAWLAQIRQKAVAVLLIGDAAPNFATRLKAVGYENYEI-VETMA 404 Query: 413 SAVSQALSLARNCQANSVLLSPACASFDQYPNFEARGDHFR 453 +AV + L LA A++VLLSPACASFDQY +FE RG+ FR Sbjct: 405 NAVQRGLELASKNNASAVLLSPACASFDQYNSFEERGEDFR 445 >SYNPCCN_2850 murE UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase Length = 505 Score = 76.6 bits (187), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQ 158 +G+TGTNGKTT +HL+++ L + + G + GY A +L ++ + Sbjct: 122 VGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTLYTRWPGYQKTATHTTPFATDLQKQLAE 181 Query: 159 GTRPKPDWVVMEMSSYQIEA--AAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLER 216 + + VME+SS+ + + ++T LT DHL+ HGT+E Y A K L + Sbjct: 182 ALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGTMENYFAAKALLFKE 241 Query: 217 SEI---PVLNADDADIRQHCGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQG----WVS-R 268 S + V+N DD ++ + S D + + L G +V+ + Sbjct: 242 SYLQGRAVINQDDPYGQRLIDRLPLDQVYTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQ 301 Query: 269 GEQHLFPADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 GE FP S PL G+ N N+L A+ L G+ + + L F GVP R+E Sbjct: 302 GE---FPFLS-PLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFPGVPGRME 351 >SYNPCCN_2928 murC UDP-N-acetylmuramate-alanine ligase Length = 505 Score = 53.9 bits (128), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMS 172 IG+ GT+GKTT + L+ +VL AGL+ + VG G+ +++V E+ Sbjct: 160 IGVAGTHGKTTTSSLIGYVLKEAGLDPTIV--VGGEVDAWQGNAYLGS---GEYLVAEVD 214 Query: 173 SYQIEAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQH 232 + + P IGI T + DH + + T+ I R + + D +RQH Sbjct: 215 ESD-GSLTKHHPEIGIVTNIELDHPDHYSTLAEVVEIFRTFESHCQTLIGCLDCGVVRQH 273 Query: 233 CGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFPADSLPLPGEHNRQNMLL 292 + D+ Q N RG ++ LPG+HN N L Sbjct: 274 LSPTITYSLENHPEADYQARQIKRQAHGNEVEVWERGV--CLGTMTVTLPGDHNISNALA 331 Query: 293 VTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 A G+ I A+ F G R E G GI +D Sbjct: 332 AVAVGRLLGLDFPVIAQAIASFNGAKRRFECKGYCNGITFIDD 374 >SYNPCCN_1595 murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase Length = 454 Score = 53.9 bits (128), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 35/227 (15%) Query: 100 MSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEV--- 156 ++ W IP IG+TG+ GKTT L+ VL+ GNV + A E+ Sbjct: 99 IAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQ-------FGNVHKTRANYNNEIGVP 151 Query: 157 --LQGTRPKPDWVVMEMSSY---QIEAAAEVS-PRIGIWTTLTPDHLERHGTIEAYRAIK 210 L P D+ ++EM+ QI A+++ P IG+ T + H+ G+ A K Sbjct: 152 KTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGSELAIAEAK 211 Query: 211 RGLLER---SEIPVLNADDADIRQHCGH-WSRSCIRWVSCGDHSPEGGNPQLTVNAQGWV 266 LL +LN D+A + + W I + EGG+ TV+ Sbjct: 212 CELLAHQPPESTAILNRDNALLMETAQRFWQGKTITY------GLEGGDVHGTVD----- 260 Query: 267 SRGEQHLFPADSLPLP--GEHNRQNMLLVTAAALAAGVSASTIEAAL 311 GE + SLPLP G HN N L A A G+ +++ L Sbjct: 261 --GENLILDGVSLPLPLAGVHNASNYLAAIAVAQCLGLDWQQLQSGL 305 >SYNPCCN_1822 slr0938 hypothetical protein Length = 459 Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 48/257 (18%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAP---MAGNV--GYSAAELALEVLQGTRPKPDWV 167 I + GTNGKTT + LL+ +L G N+ G A LA L G R D+ Sbjct: 62 ILVVGTNGKTTTSLLLRKILVDQGYRVTHNATGANLINGLITALLADANLFG-RLSTDFA 120 Query: 168 VMEMSSYQIE-AAAEVSPRIGIWTTLTPDHLERHGTIEAY-----RAIKRGLLERSEIPV 221 ++E+ + + PR + L D L+R+G +++ +AI L + I Sbjct: 121 ILEVDENVLPLVLKDCQPRAILALNLFRDQLDRYGEVDSISQRWQKAIAP--LPENTIVA 178 Query: 222 LNADDADIRQHCGHW--SRSCIRWVSCGD-------------HSPEGGNPQLTVNAQG-W 265 +NADD + H G R C +S D + P+ G +++ +G + Sbjct: 179 VNADDPTL-SHLGQKLAQRVCYFGLSEPDLYLEEIPHAVDSIYCPQCGT---SLDYRGVY 234 Query: 266 VS------------RGEQHLFPADSLP--LPGEHNRQNMLLVTAAALAAGVSASTIEAAL 311 +S + Q F + P L G +N+ N L A GV+ I + Sbjct: 235 LSHLGDYQCPSCGFQKSQPAFHSSKWPQILIGVYNKYNTLAAGLVAQQLGVNTENIFNNI 294 Query: 312 RCFTGVPHRLEPLGSVG 328 R F R E L G Sbjct: 295 RSFKAAFGRAEELNVEG 311 >SYNPCCN_1322 folC folyl-polyglutamate synthetase Length = 428 Score = 30.0 bits (66), Expect = 0.24, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 95 RVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLE 138 R+ G ++ + +P++ + GTNGK +V L VLA AG + Sbjct: 21 RIHGLLAKLGNPQAKVPYVHVGGTNGKGSVCAYLSSVLAEAGYK 64 >SYNPCCN_0365 sll1025 hypothetical protein Length = 392 Score = 29.3 bits (64), Expect = 0.49, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 22/33 (66%) Query: 4 SVVVGLGRSGSGAARLLQAQGYDVVVLERGDEP 36 ++VVG G +G+ A LQ QG V++LE+ +P Sbjct: 6 AIVVGAGITGAAIAYELQNQGQRVLLLEKHRQP 38 >SYNPCCN_0512 sll1946 hypothetical protein Length = 825 Score = 28.9 bits (63), Expect = 0.65, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 20/40 (50%) Query: 415 VSQALSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQ 454 VSQ LA+N Q L P A D+ ++ R D+ RQ Sbjct: 671 VSQLYHLAQNLQQGIAGLDPVFAQVDRINLYDPRHDYLRQ 710 >SYNPCCN_0889 slr1540 hypothetical protein Length = 311 Score = 28.5 bits (62), Expect = 0.68, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%) Query: 18 RLLQAQGYDVVVLERGDEPALRDKAHALRQ----QNITIQLGCPLELDSFTPWLDSAG 71 R+L AQG++VV+ RG+ P D + + Q + + QL LE + F D+ G Sbjct: 18 RVLVAQGHEVVLFNRGNRP---DPVNGVAQIHGDRRVAEQLREKLEKEEFDVIFDNNG 72 >SYNPCCN_1270 pds phytoene desaturase Length = 472 Score = 28.5 bits (62), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 3 RSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNIT-IQLGCPLELD 61 R V+ G G +G A+ L G+ VVLER D L K A + ++ + G + Sbjct: 2 RVVIAGAGLAGLACAKYLADAGFTPVVLERRD--VLGGKIAAWKDEDGDWYETGLHIFFG 59 Query: 62 SFTPWLDSAGEVVISPGIAWDHHTL 86 ++ L E+ I + W H++ Sbjct: 60 AYPNMLQLFKELDIEDRLQWKEHSM 84 >SYNPCCN_0983 recJ single-strand-DNA-specific exonuclease Length = 759 Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 46 RQQNITIQLGCPLELDSFTPWLDSAGEVVISPGIAWDHH 84 R N L + + P D G+VV PG+ W HH Sbjct: 523 RTGNKVSYLKTSFRVTDYPPKTDDDGQVVQCPGVWWGHH 561 Database: GCA_000284215.1P Posted date: Aug 27, 2016 10:55 PM Number of letters in database: 1,030,668 Number of sequences in database: 3169 Lambda K H 0.319 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3169 Number of Hits to DB: 1,002,930 Number of extensions: 44198 Number of successful extensions: 169 Number of sequences better than 1.0: 14 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 14 Length of query: 462 Length of database: 1,030,668 Length adjustment: 85 Effective length of query: 377 Effective length of database: 761,303 Effective search space: 287011231 Effective search space used: 287011231 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)