cyanobase / GCA_000153285.1 - WH7805

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= WH7805_12733 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (462 letters) Database: GCA_000231365.2P 4627 sequences; 1,420,067 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value FJSC11DRAFT_1763 UDP-N-acetylmuramoylalanine--D-glutamate ligase 360 e-119 FJSC11DRAFT_4171 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6... 54 2e-08 FJSC11DRAFT_1205 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diam... 48 7e-07 FJSC11DRAFT_4214 UDP-N-acetylmuramate--L-alanine ligase 39 6e-04 FJSC11DRAFT_2562 protein of unknown function DUF1727 37 0.003 FJSC11DRAFT_2282 amine oxidase 35 0.011 FJSC11DRAFT_1075 Auxin Efflux Carrier 32 0.096 D94b149c9617057ccfe7d89f1356ae58

>FJSC11DRAFT_1763 UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 478 Score = 360 bits (923), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/469 (45%), Positives = 282/469 (60%), Gaps = 23/469 (4%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M ++ V+GLG+SG AARLL+ QG++VV+ +R LR + L + IT++LG L+L Sbjct: 11 MPKAHVIGLGKSGVAAARLLKRQGWEVVLSDRNTSSNLRTQQQELAAEQITVELGYTLDL 70 Query: 61 D-SFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTN 119 S P L +V+SPG+ WD L R G GEM +AW LR IPW+ ITGTN Sbjct: 71 TGSDLPQL-----IVVSPGVPWDIPVLVQARDLGIETIGEMELAWRYLRSIPWVAITGTN 125 Query: 120 GKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKP-----DWVVMEMSSY 174 GKTT T L+ + AGL AP GN+GY+A E+AL G P DWV+ E+SSY Sbjct: 126 GKTTTTSLIASIFQTAGLNAPACGNIGYAACEVALSQAAGREESPIQNSLDWVIAEISSY 185 Query: 175 QIEAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQ-HC 233 QIE++A + PRIG+WTT TPDHL RH T+E Y IK LL +SEI + N DDA +R+ Sbjct: 186 QIESSATLKPRIGVWTTFTPDHLSRHKTLENYYNIKACLLRQSEIQIFNGDDAYLRKVGL 245 Query: 234 GHWSRSCIRWVSCGDHSPEGGNPQLTVNAQGWV-------SRGEQHLFPADSLPLPGEHN 286 W + W S G + GWV S ++ + +L + GEHN Sbjct: 246 SDWPDA--YWTSVQGKDFLIGEKGFYIQ-DGWVFQTYHDGSAKDEPIVEVSALRMVGEHN 302 Query: 287 RQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAV 346 +QN+L+ AAA AG+ I A+ F GVPHRLE + + GI NDSKATNYDAA V Sbjct: 303 QQNLLMAVAAARLAGIDQDAIARAISEFPGVPHRLEHICTWEGIDFINDSKATNYDAAEV 362 Query: 347 GLRSVQAPVVLLAGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMI 406 GL SVQ+PV+L+AGG+ K GD W+ I+++ A V+L G+ A A ++ G+ I Sbjct: 363 GLASVQSPVILIAGGEAKAGDDTAWMAKIKAKAAAVLLIGDAAKVFAQRLQEVGYTNYEI 422 Query: 407 HCADLDSAVSQALSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQL 455 +D AVS++ LA+ QA VLLSPACASFDQYPNFE RG+HFRQL Sbjct: 423 -VETMDKAVSKSAELAKQYQAAVVLLSPACASFDQYPNFEVRGEHFRQL 470 >FJSC11DRAFT_4171 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase Length = 499 Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 40/227 (17%) Query: 126 HLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQGTRPKPDWVVMEM 171 HL+++ L A + G + G++ A EL ++ ++ VME+ Sbjct: 126 HLIEYFLNQANKPTALMGTLYTRWAGFTQTAVHTTPFAVELQHQLATAIAAGNEYGVMEV 185 Query: 172 SSYQIEAAAEVSPR--IGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIP---VLNADD 226 SS+ + + + +G+++ LT DHL+ H +E Y A K L + ++NADD Sbjct: 186 SSHALAQGRVMGCKFEVGVFSNLTQDHLDFHRDMEDYFAAKALLFNSDYLKGRAIINADD 245 Query: 227 ADIRQHCGH------WSRSCIR-----WVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFP 275 A ++ WS S W+S + P G + +L R Sbjct: 246 AYGQRLIASLDADQVWSYSVSNSTADLWMSDLSYEPNGVSGKLHTPEGDATFRS------ 299 Query: 276 ADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 PL G++N +N+L A L G+ + + + F GVP R+E Sbjct: 300 ----PLVGQYNLENLLAAVGAVLHLGLDLELVVSTIPEFPGVPGRME 342 >FJSC11DRAFT_1205 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase Length = 452 Score = 48.1 bits (113), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 28/206 (13%) Query: 104 WDALRGIPWIGITGTNGKTTVTHLLQHVLAHAG----LEAPMAGNVGYSAAELALEVLQG 159 W IP IG+TG+ GKTT L+ VLA G A +G L L Sbjct: 101 WRDRFEIPVIGVTGSVGKTTTKELIAAVLATQGKVHKTHANFNNEIGVPKTLLELNA--- 157 Query: 160 TRPKPDWVVMEMSSYQIEAAAEVS----PRIGIWTTLTPDHLERHGTIEAYRAIKRGLLE 215 + D+ V+EM+ AE++ P IG+ T + H+E G+ A A K LL Sbjct: 158 ---EHDFAVVEMAMRGKGQIAELTQIARPTIGVITNVGTAHIELLGSEAAIAAAKCELLA 214 Query: 216 ---RSEIPVLNADDADIRQHCGH-WSRSCIRWVSCGDHSPEGGNPQLTVNAQGWVSRGEQ 271 + + +LN D+ + + WS I + GG+ Q + ++ + Sbjct: 215 QMPKDSVAILNYDNPLLIETAAKVWSGKVITF------GFTGGDIQGELIDNNTLAVADM 268 Query: 272 HLFPADSLPLPGEHNRQNMLLVTAAA 297 L LP+PG H N + A A Sbjct: 269 QL----PLPMPGRHIAANYMAALAVA 290 >FJSC11DRAFT_4214 UDP-N-acetylmuramate--L-alanine ligase Length = 487 Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 22/230 (9%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMS 172 I + GT+GKTT + ++ ++L AGL+ + A E + Q ++V E Sbjct: 137 IAVAGTHGKTTTSSMIGYMLLQAGLDPTILIGGEVDAWEGNARLGQSC-----YLVAEAD 191 Query: 173 SYQIEAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQ- 231 + + +P IG+ T + DH + + +E I + V + D A +R Sbjct: 192 ESD-GSLVKHAPEIGVITNIELDHPDHYDNLEEVVEIFHTFANSCKTLVASIDCATVRDR 250 Query: 232 ------HCGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFPADSLPLPGEH 285 + H V+ D+ +G A W RG+ +L L H Sbjct: 251 LQPTISYSLHPDTGADYTVTNIDYRADG------TTALVW-ERGKA--LGVLNLRLLSRH 301 Query: 286 NRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 N N L A G+ I L F G R E G GI +D Sbjct: 302 NLSNALAAVAVGRVLGLEFGEIAKGLATFEGARRRFEFRGEAHGITFIDD 351 >FJSC11DRAFT_2562 protein of unknown function DUF1727 Length = 448 Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 144/362 (39%), Gaps = 64/362 (17%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEA---PMAGNV--GYSAAELALEVLQGTRPKPDWV 167 I + GTNGKTT + L+ +L G N+ G A + L G+ D+ Sbjct: 65 ILVAGTNGKTTTSLFLRDILERQGFRVAHNSTGANLENGLMTALMESANLVGSL-DVDYA 123 Query: 168 VMEMSSYQI-EAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKR-----GLLERSEIPV 221 ++E+ + A + P++ + L D L+R+G ++ KR L I V Sbjct: 124 ILEVDENILPRVLAPIQPKLIVCLNLFRDQLDRYGEVDTIS--KRWGSAIATLPPETIIV 181 Query: 222 LNADDADIRQHCGHWSRSCIRWVSCGD---------------HSPEGGNPQLTVNAQG-W 265 NADD I S+ + + + + P G+ ++ +G + Sbjct: 182 ANADDPTICYLGQQLSQQRVTFFGLNEPENYLESIPHAVDSIYCPSCGH---ALDYKGVY 238 Query: 266 VSRGEQHLFPA----------DSLPLP----GEHNRQNMLLVTAAALAAGVSASTIEAAL 311 +S ++ P+ DS P G +N+ N L AA+ G+ +TI A+ Sbjct: 239 LSHMGEYTCPSCGFTRNQPTIDSSRWPQILIGLYNKYNTLAAATAAMELGIEEATIRDAI 298 Query: 312 RCFTGVPHRLEPLGSVGG---IPVFNDSKATNYDAAAVGLRSVQAPVVLLAGGQTKKGDA 368 F R E L G I + + TN + V +S +L+ + + G+ Sbjct: 299 PNFQPAFGRAEELNINGKQVRILLSKNPVGTN-ETIRVVTQSHHKTTLLVLNDRIQDGED 357 Query: 369 VPWL------KLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCA-----DLDSAVSQ 417 V W+ KL+Q + +++ G+ A ++A + S A P C +L A++ Sbjct: 358 VSWIWDVDTEKLVQ-RGGTLIVSGDRAYDMALRLRYSDPA-PQNTCKLIVQENLQQAINT 415 Query: 418 AL 419 AL Sbjct: 416 AL 417 >FJSC11DRAFT_2282 amine oxidase Length = 503 Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 2 SRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEP 36 + +VVG G +G GA L QGYDV +LE G P Sbjct: 8 KKVIVVGAGWAGLGATYHLAKQGYDVTLLEAGSYP 42 >FJSC11DRAFT_1075 Auxin Efflux Carrier Length = 308 Score = 31.6 bits (70), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 22/111 (19%) Query: 46 RQQNITIQLGCPLELDSFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWD 105 R + +G PL + +F D +G++ I+P IA+ L AL G M + W Sbjct: 32 RLGHFLFWVGVPLSIVAFLYQTDLSGQIWIAPAIAYLAIFLGAL-------LGWMGIKWQ 84 Query: 106 ALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEV 156 AL T N LQ + L A M GN GY + L + Sbjct: 85 AL-------FTKNN--------LQQPTQGSFLLAAMVGNTGYLGYPVTLAI 120 Database: GCA_000231365.2P Posted date: Aug 27, 2016 10:41 PM Number of letters in database: 1,420,067 Number of sequences in database: 4627 Lambda K H 0.319 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4627 Number of Hits to DB: 1,315,651 Number of extensions: 55685 Number of successful extensions: 184 Number of sequences better than 1.0: 11 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 12 Length of query: 462 Length of database: 1,420,067 Length adjustment: 87 Effective length of query: 375 Effective length of database: 1,017,518 Effective search space: 381569250 Effective search space used: 381569250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)