cyanobase / GCA_000153285.1 - WH7805

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= WH7805_12733 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (462 letters) Database: GCA_000180455.1P 5822 sequences; 1,812,051 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value OSCI_3590049 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase 347 e-115 OSCI_4110031 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-d... 56 3e-09 OSCI_4030017 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanin... 48 1e-06 OSCI_3920006 murC UDP-N-acetylmuramate--L-alanine ligase 40 4e-04 OSCI_2870009 Sodium/hydrogen exchanger 34 0.037 OSCI_30018 Folylpolyglutamate synthetase 30 0.50 B1a27bc042948c76a1cf810b881592a5

>OSCI_3590049 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase Length = 449 Score = 347 bits (890), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/457 (44%), Positives = 273/457 (59%), Gaps = 16/457 (3%) Query: 1 MSRSVVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNITIQLGCPLEL 60 M + ++GLGRSG AARLL+ +GY V + +R P L+ + L + I ++L Sbjct: 1 MPNAHIIGLGRSGIAAARLLKREGYSVTLSDRASSPILQQQQQELATEGIAVEL-----C 55 Query: 61 DSFTPWLDSAGEVVISPGIAWDHHTLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNG 120 SF P +V+SPG+ WD L R G GE+ +AW L+ PWIGITGTNG Sbjct: 56 HSFAP-ATPLKLIVVSPGVPWDLPALIRARELGIETIGEVELAWRHLQSQPWIGITGTNG 114 Query: 121 KTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAA 180 KTT T L+ + AG AP GN+GY+A ELAL G +P PDWV+ EMSSYQIE++ Sbjct: 115 KTTTTALIAAIFQTAGFYAPACGNIGYAACELAL----GEKP-PDWVIAEMSSYQIESSP 169 Query: 181 EVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQH-CGHWSRS 239 ++PRI IWTT TPDHL RH T+E Y IK LL++SE+ V+N DD +R+ W ++ Sbjct: 170 SIAPRISIWTTFTPDHLSRHKTLENYYNIKAHLLKQSELQVINGDDPYLREKGVESWPKA 229 Query: 240 CIRWVSCGDHSPEGGNPQLTVNAQ-GWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAAL 298 C W S + G+P + GW + + P DSL + G HN+QN+L+ A A Sbjct: 230 C--WTSVNGKAELLGDPARGAYIEDGWAIALGEKILPVDSLRMVGSHNQQNLLMAVATAR 287 Query: 299 AAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQAPVVLL 358 AG+ I A+ F GV HRLE + + GI NDSKATNYDAA VGL SV P +L+ Sbjct: 288 LAGIEKDAIAQAITNFPGVSHRLEHIRTWAGIDFINDSKATNYDAAEVGLASVATPAILI 347 Query: 359 AGGQTKKGDAVPWLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLDSAVSQA 418 AGG+ K+GD + W++ IQ++ A V+L G A A ++ + + I ++ AVS++ Sbjct: 348 AGGEAKEGDDIAWIETIQAKAAAVLLIGNAADTFAKRLQQANYNNWEI-VETMERAVSRS 406 Query: 419 LSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQL 455 LA+ A VLLSPACASFDQY NFE RGD FRQL Sbjct: 407 SELAKEHNAKVVLLSPACASFDQYQNFEQRGDDFRQL 443 >OSCI_4110031 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase Length = 516 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 40/227 (17%) Query: 126 HLLQHVLAHAGLEAPMAGNV-----GYS---------AAELALEVLQGTRPKPDWVVMEM 171 HL++ +L+ A L + G + G+ A EL ++ + +ME+ Sbjct: 146 HLIEFLLSKAELPTALFGTLYTRWPGFQETAIHTTPFAVELQKQLAAAVEAGSKFGIMEV 205 Query: 172 SSYQIEAAAEVSP--RIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIP---VLNADD 226 SS+ + + + + ++T LT DHL+ H +E Y K L + + ++NADD Sbjct: 206 SSHALAQSRVLGCPFEVAVFTNLTQDHLDYHRDMEDYFNAKALLFSSNYLKGRAIVNADD 265 Query: 227 ADIRQHCGH------WSRSCIR-----WVSCGDHSPEGGNPQLTVNAQGWVSRGEQHLFP 275 A R+ WS S W S + P G V +GE + Sbjct: 266 AYGRRIIDSLNSEQVWSYSTNDSKADLWASDLKYEPNG------VKGILHTPKGEADFY- 318 Query: 276 ADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLE 322 LPL G++N N+L A L G+ S I L F GVP R+E Sbjct: 319 ---LPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFPGVPGRVE 362 >OSCI_4030017 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase Length = 453 Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 36/216 (16%) Query: 104 WDALRGIPWIGITGTNGKTTVTHLLQHVLAHAG--LEAPMAGNVGYSAAELALEVLQGTR 161 W IP I +TG+ GKTT L+ VL G L+ + N + LE+ + Sbjct: 100 WRDQFNIPVIAVTGSVGKTTTKELIAAVLTTKGNVLKTQLNYNNEIGVPKTLLELSESHH 159 Query: 162 PKPDWVVMEM---SSYQIEAAAEVS-PRIGIWTTLTPDHLERHGTIEAYRAIKRGLLER- 216 + V+EM +S +I +++ P I + T + H+ R G+ EA K LL Sbjct: 160 ----YAVIEMGMRASGEIAFLTQIARPTIAVITNVGTAHIGRLGSREAIAQAKCELLAEM 215 Query: 217 --SEIPVLNADDADIRQHCGH-WSRSCIRWVSCGDHSPEGGN--PQLTVNAQGWVSRGEQ 271 I +LN+D+A + W + + E GN P+L + Sbjct: 216 PNDSIAILNSDNALLMATAAKVWQGETLAY------GLEKGNLCPELI----------DD 259 Query: 272 HLFPADS----LPLPGEHNRQNMLLVTAAALAAGVS 303 DS LPLPG HN N L A A GVS Sbjct: 260 RTISIDSINLPLPLPGRHNAVNYLAALAVAKVLGVS 295 >OSCI_3920006 murC UDP-N-acetylmuramate--L-alanine ligase Length = 539 Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 24/231 (10%) Query: 113 IGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGYSAAELALEVLQGTRPKPDWVVMEMS 172 I + GT+GKTT + ++ +L AGL+ + +A E + G ++V E Sbjct: 163 IAVAGTHGKTTTSSMIGFMLLKAGLDPTIVVGGEVNAWEGNARLGHGP-----YLVAEAD 217 Query: 173 SYQIEAAAEVSPRIGIWTTLTPDHLERHGTIEAYRAIKRGLLERSEIPVLNADDADIRQH 232 + ++S +IG+ T + DH + + T++ A + +I V D ++ Sbjct: 218 ESD-GSLVKLSAKIGVVTNIELDHPDHYDTLDQVIATFNVFAQNCQILVGCIDCDTVKNS 276 Query: 233 CGHWSRSCIRWVSCGDHSPEGGNPQLTVNAQGWVSR--------GEQHLFPADSLPLPGE 284 + + + D + + A ++R GE L L G+ Sbjct: 277 L----KPSVSYSLEADRGADYTVDSVEYRADCTIARVWERGTALGEMQ------LKLLGQ 326 Query: 285 HNRQNMLLVTAAALAAGVSASTIEAALRCFTGVPHRLEPLGSVGGIPVFND 335 HN N L A G+ + I A+ F G R E G GI +D Sbjct: 327 HNLSNALAAVAVGRLLGLEFAVIAKAIADFEGARRRFEVRGEHNGILFVDD 377 >OSCI_2870009 Sodium/hydrogen exchanger Length = 752 Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Query: 5 VVVGLGRSGSGAARLLQAQGYDVVVLERGDEPALRDKAHALRQQNI 50 V+ G GR G RL+Q+ GY VVV+++ + + R QNI Sbjct: 418 VICGYGRVGRNLVRLMQSHGYPVVVIDQSE-----SRVQECRAQNI 458 >OSCI_30018 Folylpolyglutamate synthetase Length = 431 Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 108 RGIPWIGITGTNGKTTVTHLLQHVLAHAGLE 138 + IP I + GTNGK +V L ++L AG E Sbjct: 34 QKIPIIHVAGTNGKGSVCAYLSYILTAAGYE 64 Database: GCA_000180455.1P Posted date: Aug 27, 2016 10:37 PM Number of letters in database: 1,812,051 Number of sequences in database: 5822 Lambda K H 0.319 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5822 Number of Hits to DB: 1,683,388 Number of extensions: 72016 Number of successful extensions: 235 Number of sequences better than 1.0: 11 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 12 Length of query: 462 Length of database: 1,812,051 Length adjustment: 89 Effective length of query: 373 Effective length of database: 1,293,893 Effective search space: 482622089 Effective search space used: 482622089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)