BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= P9215_00281 wcaG Nucleoside-diphosphate-sugar epimerase
(292 letters)
Database: GCA_000300115.1P
9972 sequences; 2,716,567 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FDUTEX481_06721 NAD dependent epimerase/dehydratase family protein 44 9e-06
FDUTEX481_04090 NAD-dependent epimerase/dehydratase 34 0.022
FDUTEX481_01478 UDP-glucose 4-epimerase 32 0.060
FDUTEX481_04045 NAD dependent epimerase/dehydratase family protein 31 0.14
FDUTEX481_04473 hypothetical protein 30 0.20
>FDUTEX481_06721 NAD dependent epimerase/dehydratase family protein
Length = 275
Score = 44.3 bits (103), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 48/288 (16%)
Query: 16 ILGCGFSGSFFAKTIRQ---------LGCTALTSSRSEKKDPYSFVFNSDSDVVPHKKIF 66
I+GCG+ GS A+ RQ SS + V +D+D + KK+
Sbjct: 5 IIGCGYVGSAVAQYWRQKMNFVVTATTTTPTRVSSLEQVAQKVVVVKGNDADGL--KKVL 62
Query: 67 DGVTHILSCIPPDKNGNDPVLKCLKNRLKSLS--------LEWVGYLSTTGVYGHTKGDW 118
+ +L + G D + K+L+ + + Y + VYG G++
Sbjct: 63 ENQDVVLLSV--GAKGADFYEEAYLQTAKTLASILPAFPNVRQLIYTGSYSVYGDKNGEF 120
Query: 119 VSEIDEPNPLQKRSHKRLNCEKEWI-----DSGLPVQIFRLPGIYGPGRSTFEAIKNKKI 173
V E NP ++ R+ E E + L V I RL GIYGPGR + ++
Sbjct: 121 VDEETTANP--STTNGRIMKETEDVLLSAASEHLRVCILRLGGIYGPGRELIKIF--GRL 176
Query: 174 RVISK---KNQVFSRIHVADITNAIIYLLQNKNSLKFYQIINIADDKPCSQIEVIQYCYD 230
S+ + V + IH+ DI I + Q+ + I N+ DD S E +
Sbjct: 177 AGTSRPGNGDDVANWIHLDDIVGVIEFARQH----NWQGIYNVVDDAHLSSREFFD---N 229
Query: 231 LLGLTMPKPILFEDAKEELSPIAQSFWMENRKVSNKLLCQTLGYKLIY 278
+L PI ++ + P + W+ N+K+ + GY+LI+
Sbjct: 230 VLKTHNLPPINWDASLPSNRPY--NAWVSNQKIKDA------GYQLIH 269
>FDUTEX481_04090 NAD-dependent epimerase/dehydratase
Length = 342
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 104 YLSTTGVYGHTKGDWVSEIDEPNPLQKRSHKRLNCE---KEWIDSGLPVQIFRLPGIYGP 160
Y S+ VYG D+V E NP + + E K D R YG
Sbjct: 113 YTSSCSVYGFATEDYVDEESTINPQTAYAKCKGLVEQDVKHLADDSFSPTFLRNATAYGA 172
Query: 161 G-RSTFEAIKN---------KKIRVISKKNQVFSRIHVADITNAIIYLLQNKNSLKFYQI 210
R F+ + N K+I++ S +H+ DI AII L+ + QI
Sbjct: 173 SPRMRFDIVLNNLSGWAWTIKEIKMNSDGTPWRPLVHILDICKAIICTLEAPRDVIHNQI 232
Query: 211 INIADDKPCSQIEVI 225
N+ D Q++ I
Sbjct: 233 FNVGDTNGNYQVKQI 247
>FDUTEX481_01478 UDP-glucose 4-epimerase
Length = 332
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 186 IHVADITNAII----YLLQNKNSLKFYQIINIADDKPCSQIEVIQYCYDLLGLTMP 237
IHV+D+ +A + YLLQ +S ++ N+ + S EVI D+ GLT+P
Sbjct: 231 IHVSDLADAHVLGLEYLLQGNDS----EVFNLGNGLGFSVKEVISAAEDVTGLTIP 282
>FDUTEX481_04045 NAD dependent epimerase/dehydratase family protein
Length = 342
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 104 YLSTTGVYG-HTKGDWVSEIDEPNPLQKRSHKRLNCEKEWI---DSGLPVQIFRLPGIYG 159
Y+S+ VYG T+GD V+E NP + + E++ + D R +G
Sbjct: 113 YMSSCSVYGVATEGD-VTEESPVNPQTAYAECKTLVERDVMQLADDDFSPTFMRNATAFG 171
Query: 160 PG-RSTFEAIKN---------KKIRVISKKNQVFSRIHVADITNAIIYLLQNKNSLKFYQ 209
R F+ + N K+I++ S +H DI AI+ L+ + Q
Sbjct: 172 ASPRMRFDIVLNNLAGLAWTSKEIKMTSDGTPWRPLVHALDICKAIVCALEAPRDIVHRQ 231
Query: 210 IINIAD 215
I N+ D
Sbjct: 232 IFNVGD 237
>FDUTEX481_04473 hypothetical protein
Length = 231
Score = 30.4 bits (67), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 180 NQVFSRIHVADITNAIIYLLQNKNSLKFYQIINIADDKPCSQIEVIQYCYDLLGLTMPK 238
+ R + +T IIY +NK +I I P ++I Y + GL++PK
Sbjct: 110 GRTLGRSAIKALTGKIIYFSKNKGEAYLSWLIFITRMLPIFSFDLISYAAGIAGLSLPK 168
Database: GCA_000300115.1P
Posted date: Aug 27, 2016 10:45 PM
Number of letters in database: 2,716,567
Number of sequences in database: 9972
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9972
Number of Hits to DB: 1,556,356
Number of extensions: 62413
Number of successful extensions: 145
Number of sequences better than 1.0: 5
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 2,716,567
Length adjustment: 87
Effective length of query: 205
Effective length of database: 1,849,003
Effective search space: 379045615
Effective search space used: 379045615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)