cyanobase / GCA_000015645.1 - A9601

BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= A9601_13281 putative chaperon-like protein for quinone binding in photosystem II (320 letters) Database: GCA_000787675.1P 4790 sequences; 1,244,012 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value N44_03187 putative chaperon-like protein Ycf39 for quinone bindi... 340 e-116 N44_01931 expressed protein 64 8e-13 N44_01199 dTDP-glucose 4,6-dehydratase 44 9e-06 N44_02336 nucleoside-diphosphate-sugar epimerases 41 5e-05 N44_01200 UDP-glucose 4-epimerase 39 2e-04 N44_03440 ribosome-associated endonuclease 35 0.006 N44_01818 similar to CDP-glucose 4,6-dehydratase 34 0.008 N44_04317 sorbitol-6-phosphate 2-dehydrogenase 34 0.009 N44_01898 cell division inhibitor 33 0.027 N44_03279 dTDP-glucose 4,6-dehydratase 30 0.15 A27697f36ca1cc851f67b2b890ac2338

>N44_03187 putative chaperon-like protein Ycf39 for quinone binding in photosystem II Length = 325 Score = 340 bits (871), Expect = e-116, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 223/307 (72%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKASFLQEWGCELTKGNLLNSSDIEY 60 MK+L+VGATGTLGRQI + AI++GH+VRC VR+ RKA+FL+EWG EL G L + S I Sbjct: 1 MKVLVVGATGTLGRQIVRHAIDQGHQVRCLVRSQRKAAFLKEWGAELVGGTLRDKSTIIA 60 Query: 61 ALQDIEVVIDAATSRPDDPKSIYEIDWDGKLNLFNACESLNVKRVIFLSILLTEKFRNVP 120 AL+ ++ VIDAAT+R D SI ++DWDGK+NL A ++ V R IF SIL EK+ NVP Sbjct: 61 ALEGMDAVIDAATARATDSASIKQVDWDGKVNLIQAAKTAGVDRFIFFSILNAEKYPNVP 120 Query: 121 LMDIKFCTEKLLEKSDLDYTIFKCAAFMQGVIGQFAIPILDSQAVWMSGTPTKIAYMNTQ 180 LM+IK CTEK L +S L YTI + FMQG+IGQ+AIP+LD+Q VW++G T IAYM+TQ Sbjct: 121 LMEIKRCTEKFLAESGLKYTILRPCGFMQGLIGQYAIPMLDNQTVWITGESTAIAYMDTQ 180 Query: 181 DMAKVVVAAVNNPKTHRTSLPLVGPKAWDSNEVISLCEKFSEKKAKIFRVSPFLISVTQK 240 D+AK V A+ P+T S P+VG KAW + E+I +CE+ S K+ KI+R+ L+ + Sbjct: 181 DIAKFAVRALEVPETVGQSYPVVGSKAWKAEEIIEVCERLSGKEGKIWRLPMGLLRFMRG 240 Query: 241 VVSFFQDSLNVAERLAFAEVTSSGESLDADMSKTYEILELKKEDMTSLESYIKEYYQQIL 300 + FQ + N+++RLAFAEV +S ++LDA M++ Y++ L T+LESY++EY+ +IL Sbjct: 241 ISRCFQWTYNISDRLAFAEVLASDQALDAPMAEVYQVFGLDPSQTTTLESYLQEYFSRIL 300 Query: 301 KRLREME 307 K+L+E++ Sbjct: 301 KKLKEID 307 >N44_01931 expressed protein Length = 219 Score = 63.5 bits (153), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKASFLQEWGCELTKGNLLNSSDIEY 60 MK + GATG GR+I Q +E VR VRN KA+ + G E+ G++ + +E Sbjct: 1 MKAFVAGATGETGRRIVAQLVERQIPVRALVRNREKAAEILPAGVEIVVGDVQQADKLEA 60 Query: 61 ALQDIEVVIDAATSRPD-DPKSIYEIDWDGKLNLFNACESLNVKRVIFLSILLTEKFRNV 119 + D V++ A +RP +P +D+ G NL +A + ++ + ++ L F + Sbjct: 61 LIADCSVLLCATGARPSFNPTEPLLVDYLGTKNLIDAAKKKGIEHFVLVTSLCVSNFFH- 119 Query: 120 PL------MDIKFCTEKLLEKSDLDYTIFK 143 PL + K E L S L YTI + Sbjct: 120 PLNLFWLILFWKKQAEAYLINSGLTYTIVR 149 >N44_01199 dTDP-glucose 4,6-dehydratase Length = 338 Score = 43.5 bits (101), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 13/109 (11%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKAS-----FLQEWG-CELTKGNLLN 54 MK L+ G G LG IA Q +++ E+ F R S +L+ G C+ T G++ N Sbjct: 1 MKYLITGGCGFLGSNIAGQILKKREELLIFDNLYRSGSEQNINWLRSQGQCQFTHGDIRN 60 Query: 55 SSDIEYALQDI--EVVID-----AATSRPDDPKSIYEIDWDGKLNLFNA 96 ++D+E A+++ +V+ A T+ +P+ +EI+ G LN+ + Sbjct: 61 TNDVERAVKEFKPDVIFHLAGQVAMTTSIANPRLDFEINALGTLNILES 109 >N44_02336 nucleoside-diphosphate-sugar epimerases Length = 294 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKASFLQEWGCELTKGNLLNSSDIEY 60 MK+ L GATG +G +A+ GH+V R+ + A L+ G E+ +G+L Sbjct: 1 MKVFLTGATGYIGSTVAESLQTVGHQVIGLARSEQAAQSLEAVGIEVVRGDLHQPLKWIE 60 Query: 61 ALQDIEVVIDAATSR 75 AL ++ VI A ++ Sbjct: 61 ALCQVDGVIHTAATK 75 >N44_01200 UDP-glucose 4-epimerase Length = 294 Score = 39.3 bits (90), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 3 ILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKASFLQEWGCELTKGNLLNSSDIEYAL 62 ILL G TG LG +AK+ + EG +V R+ K S L+ ++ + L+S DIE Sbjct: 5 ILLTGGTGFLGSHLAKRLVYEGFDVIIIKRSTSKLSPLESIINQVRFYD-LDSIDIEKIF 63 Query: 63 QD--IEVVIDAATS 74 Q+ I+++I AT+ Sbjct: 64 QENVIDIIIHCATN 77 >N44_03440 ribosome-associated endonuclease Length = 311 Score = 34.7 bits (78), Expect = 0.006, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKA 37 MKIL++G T +G + K +E+GHEV F R + A Sbjct: 1 MKILIMGGTRFIGVSLTKVLVEQGHEVVLFNRGNKPA 37 >N44_01818 similar to CDP-glucose 4,6-dehydratase Length = 404 Score = 34.3 bits (77), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 24/155 (15%) Query: 2 KILLVGATGTLGRQIAKQAIEEGHEVRCF-----VRNPRKASFLQEWGCELTKGNLLNSS 56 K+L+ GA+G G + K +E G +V VR+P A L + ++ + + L+ S Sbjct: 18 KVLVTGASGFKGSWLCKALLELGTQVYATIPIHNVRHPHSAYQLFDLSQDVVEVS-LDIS 76 Query: 57 DIEYALQDIEVV-------IDAATSRP---DDPKSIYEIDWDGKLNLFNACESLNV-KRV 105 D + I V + A P DP+ + ++ G +N+ AC L + +R+ Sbjct: 77 DSQLVFDVINAVGPDIIFHLAAKAQVPVAQHDPRRAFMVNTMGTINILEACRQLEIGERI 136 Query: 106 IFLSILLTEKFRNVPLMDIKFCTEKLLEKSDLDYT 140 + +S R +P E LE S + Y Sbjct: 137 LVISTDHVFGDRQIP-------KEGFLESSPVGYA 164 >N44_04317 sorbitol-6-phosphate 2-dehydrogenase Length = 234 Score = 33.9 bits (76), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 3 ILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKASFLQEWGCELTKGNLLNSSDIEYAL 62 +L+VGATG +G +A++ GH++ RN A L EL+ +L+ +DI Sbjct: 6 VLIVGATGGIGATLARKLAVNGHKLVLVARN---ADNLSNLASELSCPSLIVPTDITNPT 62 Query: 63 Q 63 Q Sbjct: 63 Q 63 >N44_01898 cell division inhibitor Length = 307 Score = 32.7 bits (73), Expect = 0.027, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCFVRNPRKA 37 MKI + GATG +G ++ + + G ++ RNP KA Sbjct: 1 MKIAITGATGFVGSRLVVKLYDRGDDILILTRNPDKA 37 >N44_03279 dTDP-glucose 4,6-dehydratase Length = 308 Score = 30.4 bits (67), Expect = 0.15, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 1 MKILLVGATGTLGRQIAKQAIEEGHEVRCF 30 M+IL+ G G +G + + +E+G EV C Sbjct: 1 MRILVTGGAGFIGSHLIDRLMEQGQEVICL 30 Database: GCA_000787675.1P Posted date: Aug 27, 2016 10:33 PM Number of letters in database: 1,244,012 Number of sequences in database: 4790 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4790 Number of Hits to DB: 738,376 Number of extensions: 29276 Number of successful extensions: 119 Number of sequences better than 1.0: 11 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 11 Length of query: 320 Length of database: 1,244,012 Length adjustment: 83 Effective length of query: 237 Effective length of database: 846,442 Effective search space: 200606754 Effective search space used: 200606754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)