BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= alr0642 two-component sensor histidine kinase
(735 letters)
Database: GCA_000817325.1P
2645 sequences; 797,493 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M744_07390 histidine kinase 106 1e-24
M744_12100 histidine kinase 87 1e-18
M744_09830 phytochrome 81 7e-17
M744_14155 histidine kinase 62 3e-11
M744_05810 ATPase 55 7e-09
M744_08985 hypothetical protein 54 1e-08
M744_13590 ATPase 52 6e-08
M744_07080 ATPase 51 1e-07
M744_04890 hypothetical protein 49 5e-07
M744_00560 ATPase 37 0.003
>M744_07390 histidine kinase
Length = 977
Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 143/581 (24%), Positives = 246/581 (42%), Gaps = 137/581 (23%)
Query: 195 NDLYITAATGRPIYDAQKRLLGMVGADIHLLKLSQFLRRLEVSRSGQVFIVERNGMLIAN 254
ND YI A +P+ DAQ R++GM+ A + + R + R GQ
Sbjct: 208 NDWYI--AIYQPLKDAQGRVIGMIYAGQRQDQTGELARSFQDLRFGQ------------- 252
Query: 255 SSTQTPFSVINHQIHRLKATHSPDPVIQE------------------IAKQIQQN----- 291
T + F + R + + DP +Q+ IA I+Q
Sbjct: 253 --TGSAFVFLGQGSQRGETILTSDPSLQKKNFWDAKDASGQFFLRTSIADAIRQPGAFIR 310
Query: 292 --------SQGFESITEAKKLQLEWQGERNYVYVNPWRDQYGLDWLVVVSVPEKVF---M 340
++G +S A++ Q+ VY PW +W++ + E+ F
Sbjct: 311 VRYLARPWTEGLQSTQPARQEQM------LLVYYRPW------NWVIGIRQDEQEFAEPF 358
Query: 341 SKIKAHTQ--ITIALCLGALAIAVLIGYFTSVWITRPILRMNL---ASQAIASGKLDQKI 395
+++A Q + I L LG + IAVL W +R+ A+ A+ASG+L Q+I
Sbjct: 359 RRLEAIQQRSLYIQLLLGVI-IAVLGAIAARGWAAHLGMRIEQLAHAADAMASGQLQQQI 417
Query: 396 NFSHIQELNILTQSFNYMAGKLSEFFTALETSKAELEDRVEQRTADLKTALTELQRTQAQ 455
S EL +L Q+FN MA L E + LE RV++RTA L+ L++ + Q
Sbjct: 418 PTSGRDELTVLAQAFNRMAVTLRELLVS-------LEHRVQERTAALRETNDRLEQAREQ 470
Query: 456 VIQGEKMSSLGQLVAGVAHEINNPVNFIYGNITHLNAYTQDLLRMIHLYQERHPSDDPEV 515
+ S +A ++HE+ P+N I G + +D
Sbjct: 471 AEAANQAKS--AFLANMSHELRTPLNAIIGYSEMMMEEAED------------------- 509
Query: 516 QALATEIDLDFLVEDLQKMLSSMNMGTERIRSIVLSLRNFSRID----EAEFKAVDIHEG 571
I+++ L+ D +K +N + + ++ S+ + S+I+ E ++ + E
Sbjct: 510 -----GIEVEELLPDFRK----INNAGKHLLELINSILDLSKIEAGRMELYLESFSLPEL 560
Query: 572 IESTLLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAIDALDELNI 631
I I++ ++ ++ ++ D G L+ +L Q L+N+L NA + I
Sbjct: 561 INGVKSIIKPLIEKNQNQLLVDCPADIG---LMTADVTKLRQTLLNLLSNASKFTHQGTI 617
Query: 632 KRTYEEIKANPSQITIRTSVNDAQWMEIAIADNGPGI-PEQLKNRIFDPFF-----TTKP 685
+ ++ A Q+ + + D+G G+ PEQ+ +RIF+ F TT+
Sbjct: 618 QL---QVAAQGDQVVFK------------VVDSGIGMSPEQI-DRIFEAFAQADDSTTRK 661
Query: 686 VGKGTGMGMAISYQIITEKHSGKLECFSTVGQGSEFRIQVP 726
G GTG+G++IS I E GK+ S +G+GS F I +P
Sbjct: 662 FG-GTGLGLSISRHFI-EMMGGKITVESVLGEGSTFTITLP 700
>M744_12100 histidine kinase
Length = 664
Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 217/528 (41%), Gaps = 108/528 (20%)
Query: 297 SITEAKKLQLE----WQGERNYV-------------YVNPWRDQYGLDWLVVVSVPEKVF 339
S+T +++QL QG+R YV +V +++ L L + + P
Sbjct: 123 SLTIQRRIQLPPDYLRQGDRPYVRQHLTPAGLVTDVFVPLFQNDRYLGVLAIGTNPSPAV 182
Query: 340 MSKIKAHTQITIALCLGALAIAVLIGYFTSVWITRPILRMNLASQAIASGKLDQKINFSH 399
++ +TIA+ + + ++ F ++ ITRPI + ++IASG Q+I+
Sbjct: 183 VASSGLTRDVTIAVFITIWVMVIVGAVFNALIITRPIRELVEGVRSIASGNFKQRIDLPP 242
Query: 400 IQELNILTQSFNYMAGKLSEF----FTALETSKAELEDRVEQRTAD-------------L 442
EL L SFN MA +L + L + KA+LE V AD +
Sbjct: 243 SGELGELIASFNDMAEQLEGYAAQNIDELTSEKAKLETLVST-IADGALLLDADLNLVLV 301
Query: 443 KTALTELQRTQAQVIQGEKMSSLGQLVAGVAHEINNPVNFIY------------------ 484
A + + + ++G+ + + L + +A E+++P+ I
Sbjct: 302 NPAAIRIFGWEGRSLKGDDV--IDHLPSPLAQELHDPLKAIANGDREAVELRLTLPERSN 359
Query: 485 ---------------GNITHLNAYTQDLLRMIHLYQER--------HPSDDPE------V 515
N+ + QD+ R + L + + H P +
Sbjct: 360 RTVRILVSNVLDTARANVKGIAVTVQDITREVELNEAKSQFISNVSHELRTPLFNIKSFI 419
Query: 516 QALATEIDLDFLVEDLQKMLSSMNMGTERIRSIVLSLRNFSRIDEAE---FKAVDIHEGI 572
+ L D D E+ ++ LS+ N T+R+ +V + + SR++ F+ +D+ + I
Sbjct: 420 ETLHDYGD-DLSEEERREFLSTANHETDRLTRLVNDVLDLSRLESNRRYNFEGIDLVQPI 478
Query: 573 ESTLLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAID-------- 624
E TL Q +++ + E+ RD LP + L QV N++ NA+
Sbjct: 479 EQTLRTYQLNAREKGIELRSEIARD---LPAVRANYDLLLQVFANLVGNALKFTASGGCV 535
Query: 625 ALDELNIKRTYEEIKANPSQITIRTSVNDAQWMEIAIADNGPGIPEQLKNRIFDPFFTTK 684
A+ + + N S+I V+ + I I D G GI + + IFD FF +
Sbjct: 536 AMRAYLVGQPLRTEAVNHSEI-----VSSLPNIRIEINDTGIGIDAEDQEAIFDRFFRVE 590
Query: 685 ---PVGKGTGMGMAISYQIITEKHSGKLECFSTVGQGSEFRIQVPIRQ 729
+GTG+G++I I+ EKH ++ S VG G+ F +PI Q
Sbjct: 591 NRVHTLEGTGLGLSIVRNIV-EKHQSRIHLISEVGIGTTFWFDLPIYQ 637
>M744_09830 phytochrome
Length = 1594
Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 527 LVEDLQKMLSSMNMGTERIRSIVLSLRNFSRIDEA--EFKAVDIHEGIESTLLILQHRLK 584
L ++ Q L M R++++++ L N+SR++ + + + + ++ L+ ++ L
Sbjct: 1402 LDDESQDYLRRMASAAGRMQTLIIDLLNYSRVNTRGLPLQPLSLDQVLDDVLVDMEASL- 1460
Query: 585 DQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAIDALDELNIKRTYEEIKANPSQ 644
DQ I + LP I+ AGQ QV N+L NA+ ++ P
Sbjct: 1461 DQA-----SAIVERQPLPTIQGDAGQFRQVFQNLLSNAL----------KFQSADNQPL- 1504
Query: 645 ITIRTSVNDAQWMEIAIADNGPGIPEQLKNRIFDPF--FTTKPVGKGTGMGMAISYQIIT 702
I I + + +A + + IADNG G E+ +RIF+PF ++ GTG+G+AI +II
Sbjct: 1505 IQIYSELTEAGQLRLCIADNGIGFDEKYLDRIFNPFQRLHSRDAYAGTGIGLAIVKKII- 1563
Query: 703 EKHSGKLECFSTVGQGSEFRIQVPIRQKN 731
E+H + S GQGS F I P+ +K+
Sbjct: 1564 ERHGATITAKSIPGQGSVFFITFPVTEKD 1592
>M744_14155 histidine kinase
Length = 438
Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 595 IRDYGNLPLIECYAGQLNQVLMNILVNAIDALDELNIKRTYEEIKANPS--QITIRTSVN 652
I G L+ + QL +VL N+L NAI P+ +I + SV
Sbjct: 314 IEAVGTGLLVSGNSAQLYRVLANLLGNAI---------------AHTPAGGKIQLALSVV 358
Query: 653 DAQWMEIAIADNGPGIPEQLKNRIFDPFFTTKPVGK----GTGMGMAISYQIITEKHSGK 708
D +W + + DNG GIP + RIF+ F G G+G+AI Q I H G+
Sbjct: 359 D-RWGVLTVRDNGCGIPTADQARIFERFVRLDSARNRQQGGAGLGLAI-VQAIVRAHRGQ 416
Query: 709 LECFSTVGQGSEFRIQVPI 727
++ S +GQGS FR+Q+P+
Sbjct: 417 VQVTSAIGQGSCFRVQLPL 435
>M744_05810 ATPase
Length = 387
Score = 54.7 bits (130), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 ALTELQRTQAQVIQGEKMSSLGQLVAGVAHEINNPVNFIYGNITHLNAYTQDLLRMIHLY 504
A +LQ+ A + E+ L Q++A VAH++ NP+ + + +Q
Sbjct: 134 AFFQLQQQYADL--SERTKFLEQVIALVAHDLRNPLTAALLAVDTIQIRSQSF------- 184
Query: 505 QERHPSDDPEVQALATEIDLDFLVEDLQKMLSSMNMGTERIRSIVLSLRNFSRIDEAEFK 564
++AT ++ L + S + I I+ + R+ +
Sbjct: 185 ------------SVATAKEMQGLCSLFDQARSQLREIERMIAEILEATRHSGESLRINPR 232
Query: 565 AVDIHEGIESTLLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAID 624
V ++ L L R + + + +V G+LP + +L QVL+N+L NA
Sbjct: 233 EVVFEPLLQQVLEQLHERWRSKQQQLITDV---PGDLPTLYADPDRLRQVLVNLLDNA-- 287
Query: 625 ALDELNIKRTYEEIKANPS--QITIRTSVNDAQWMEIAIADNGPGIPEQLKNRIFDPF-- 680
IK P ITI +Q ++I+I+D G GIP + IF
Sbjct: 288 -------------IKYTPPGGTITIAALHRTSQKVQISISDTGSGIPRDQLSVIFKNLVR 334
Query: 681 FTTKPVGKGTGMGMAISYQIITEKHSGKLECFSTVGQGSEFRIQVPI 727
+ +G G+G+++ +I+ + H G++ S +GQGS F +P+
Sbjct: 335 LSRDSSQEGYGIGLSVCQRIV-QAHFGRIWVASELGQGSTFHFTMPV 380
>M744_08985 hypothetical protein
Length = 436
Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 54/282 (19%)
Query: 460 EKMSSLGQLVAGVAHEINNPVNFIYGNITHLNAYTQDLLRMIHLYQERHPSDDPEVQALA 519
E L Q A +HE+ NP+ I N+ A T E Q LA
Sbjct: 196 ESYGQLKQFTADASHELRNPIATIQANVQ--AALT-------------------EPQGLA 234
Query: 520 TEIDLDFLVEDLQKMLSSMNMGTERIRSIVLSLRNFSRIDEAEFKAVDIHEGIESTL--- 576
E Q++L + T R+ S+V L +R D + I L
Sbjct: 235 PE---------QQQVLQVIERLTRRLGSLVDDLLFLARQDSGLQQPAPIQNLDLDALLLD 285
Query: 577 LILQHRLKDQPDKPAIEV-IRDYGNLPLIECYAGQLNQVLMNILVNAIDALDELNIKRTY 635
++ + L Q ++++ + D + QL ++ N++ NA+
Sbjct: 286 VVEEQSLYAQEQNLSLDLQLPDADQALQLTGVREQLARLFTNLIANAL------------ 333
Query: 636 EEIKANPSQITIRTSVNDAQWMEIAIADNGPGIPEQLKNRIFDPFFTTKPVGK-----GT 690
+ Q+T++ + Q +++ + D+G GI + +F+ F+ P + G+
Sbjct: 334 -QYTPASGQVTVQVQPLN-QGLQVEVRDSGIGISPETLPHVFERFYRADPARRPRDRGGS 391
Query: 691 GMGMAISYQIITEKHSGKLECFSTVGQGSEFRIQVPIRQKNS 732
G+G+AI+ Q I E+H GK+ S VGQG+ + +P Q ++
Sbjct: 392 GLGLAIA-QAIVERHHGKIHLRSQVGQGTTAVVWLPFNQPDA 432
>M744_13590 ATPase
Length = 754
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 610 QLNQVLMNILVNAIDALDELNIKRTYEEIKANPSQITIRTSVNDAQWME-----IAIADN 664
+L Q+L+N+L NA+ K Q T+ V W E ++D
Sbjct: 503 RLRQILINLLSNAV---------------KFTEPQGTVFLRV----WREGDRAIFQVSDT 543
Query: 665 GPGIPEQLKNRIFDPF----FTTKPVGKGTGMGMAISYQIITEKHSGKLECFSTVGQGSE 720
G GIPE + ++F F + + GTG+G+A++ Q++ E H G ++ STVGQGS
Sbjct: 544 GIGIPESEQAQLFQKFQQLDTSIRRQYGGTGLGLALTKQLV-ELHGGHIQIESTVGQGST 602
Query: 721 FRIQVP 726
F + +P
Sbjct: 603 FTVWIP 608
>M744_07080 ATPase
Length = 482
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 105/275 (38%), Gaps = 73/275 (26%)
Query: 467 QLVAGVAHEINNPVNFIYGNITHLNAYTQDLLRM---IHLYQERHPSDDPEVQALATEID 523
Q V V+HE+ P+ I G Y Q LLR ++ YQ QAL T
Sbjct: 260 QFVGNVSHELKTPLTVISG-------YLQSLLRRGDNLNSYQN---------QALETA-- 301
Query: 524 LDFLVEDLQKMLSSMNMGTERIRSIVLSLRNFSRIDEA--EFKAVD------IHEGIEST 575
+ ER ++ L + +R+D F+ + I E E T
Sbjct: 302 ---------------SAEAERTIRMLQDLLDLARVDSGNLHFRLMPTVLNTLIAEVAEMT 346
Query: 576 LLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAIDALDELNIKRTY 635
+ ++ Q K I V D +L Q L+N+L NA
Sbjct: 347 RRVTGRQIIMQTPKSEIVVYAD----------QNRLEQALINLLDNAAK----------- 385
Query: 636 EEIKANPSQITIRTSVNDAQWMEIAIADNGPGIPEQLKNRIFDPFFTTKPV----GKGTG 691
+N Q+ Q I I D G GIP ++RIF+ F+ GTG
Sbjct: 386 ---YSNQDQVVYINLEQSNQQTLIHIIDQGVGIPLAHQSRIFERFYRVDEAMTRSRDGTG 442
Query: 692 MGMAISYQIITEKHSGKLECFSTVGQGSEFRIQVP 726
+G+AI+ +I E GK+ S +G+GS F I +P
Sbjct: 443 LGLAIAKSLI-EGMQGKITLRSKLGEGSTFTIILP 476
>M744_04890 hypothetical protein
Length = 637
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 515 VQALATEIDLDFLVEDL-QKMLSSMNMGTERIRSIVLSLRNFSRIDEAEF----KAVDIH 569
+++LATE D+ DL Q ML + ER+R +V SR++ +++ +
Sbjct: 422 LESLATEPDMS---ADLRQVMLQTALDDAERLRLLVQDFLTLSRLESGRIDWHPESLALD 478
Query: 570 EGIESTLLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQLNQVLMNILVNAIDALDEL 629
E + + L+ R + P+IE + +LPL+ L +VL+ +L NA
Sbjct: 479 ECVAMAMSGLRSR-HQRDSLPSIEQ-KLPASLPLVRVDGDWLVEVLIKLLDNAC------ 530
Query: 630 NIKRTYEEIKANPSQITIRTSVNDAQWMEIAIADNGPGI-PEQLKNRIFDPFFTTKPVGK 688
+ + ++I V + + +AI D+G GI P++L+ +FD F+ +
Sbjct: 531 -------KFTSAQGHVSITAVVEGDRALRVAITDDGRGIEPDRLEA-VFDRFYQEDGALR 582
Query: 689 ----GTGMGMAISYQIITEKHSGKLECFST-VGQGSEFRIQVPIRQKN 731
G+G+G+AI QI+ E+ G + S +GS F+ +P+ ++
Sbjct: 583 RSQGGSGLGLAICRQIV-ERLGGHIWAESEGRDRGSCFQFTLPLATRH 629
>M744_00560 ATPase
Length = 577
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 52/304 (17%)
Query: 434 RVEQRTADLKTALTELQRTQAQVIQGEKMSSL-GQLVAGVAHEINNPVNFIYGNITHLNA 492
R Q + + AL E R Q E +S L +A +HE+ P+ G I +L
Sbjct: 309 RANQTLLEQQQALIEAHR------QSEALSQLKTDFLANTSHELRTPLT---GMIGYLQL 359
Query: 493 YTQDLLRMIHLYQERHPSDDPEVQALATEIDLDFL--VEDLQKMLSSMNMGTERIRSIVL 550
DL P + E A A L L + D+ + + + G ++++ +
Sbjct: 360 LQDDL--------AETPEERQEFIAGAYHSALHLLGIINDILDI-ARIEAGRLQLQAETV 410
Query: 551 SLRNFSRIDEAEFKAVDIHEGIESTLLILQHRLKDQPDKPAIEVIRDYGNLPLIECYAGQ 610
LRN E ++ +G L+ + R+ + + A+ R +
Sbjct: 411 PLRNLLAEVETCLRSQAQAKG-----LVYRCRIAAETESVALWGDRQ------------R 453
Query: 611 LNQVLMNILVNAIDALDELNIKRTYEEIKANPS-QITIRTSVNDAQWMEIAIADNGPGIP 669
L QVL N++ NAI Y E++A Q N ++ + I D+G G+
Sbjct: 454 LLQVLFNLVGNAIK-----FTLTGYVEVRATAVWQPLCANGQNLPGYLRLEIEDSGIGVA 508
Query: 670 EQLKNRIFDPF-----FTTKPVGKGTGMGMAISYQIITEKHSGKLECFST-VGQGSEFRI 723
+ + +F PF T+ G G+G+G+ I +++ E G +E FS G G+
Sbjct: 509 PERQGSLFQPFSQADSSLTRQFG-GSGLGLVICRRLL-ESMGGIVELFSPGEGLGTTVTC 566
Query: 724 QVPI 727
+P+
Sbjct: 567 LIPL 570
Database: GCA_000817325.1P
Posted date: Aug 27, 2016 10:45 PM
Number of letters in database: 797,493
Number of sequences in database: 2645
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2645
Number of Hits to DB: 1,124,509
Number of extensions: 48136
Number of successful extensions: 179
Number of sequences better than 1.0: 12
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 14
Length of query: 735
Length of database: 797,493
Length adjustment: 87
Effective length of query: 648
Effective length of database: 567,378
Effective search space: 367660944
Effective search space used: 367660944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)